PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04873.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 130aa    MW: 14584.8 Da    PI: 10.6786
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04873.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.2e-161463148
                     TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l  +++q+Gg    W + +r+ g++R++k+c++rw++yl
   Pahal.C04873.1 14 RGPWSEEEDARLRSYIEQHGGAagGWMALPRKAGLRRCGKSCRLRWLNYL 63
                     89******************9899*************************7 PP
2Myb_DNA-binding452.5e-1470113246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g++++eEd  +  +++  G++ W++Ia++++ gRt++ +k++w++
   Pahal.C04873.1  70 GAFSPEEDHVICALHAAVGSR-WSLIAAHLPPGRTDNAVKNYWNT 113
                      89*******************.*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.677963IPR017930Myb domain
SuperFamilySSF466891.8E-2412111IPR009057Homeodomain-like
SMARTSM007172.7E-91365IPR001005SANT/Myb domain
PfamPF002491.2E-131463IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-211570IPR009057Homeodomain-like
CDDcd001671.58E-71663No hitNo description
PROSITE profilePS5129422.23564119IPR017930Myb domain
SMARTSM007175.2E-1168117IPR001005SANT/Myb domain
PfamPF002491.1E-1270113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2471119IPR009057Homeodomain-like
CDDcd001674.67E-771115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MGRSPCCDKA AVKRGPWSEE EDARLRSYIE QHGGAAGGWM ALPRKAGLRR CGKSCRLRWL  60
NYLRPGVRHG AFSPEEDHVI CALHAAVGSR WSLIAAHLPP GRTDNAVKNY WNTRLKKKML  120
LFAGRQPHDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141197108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
UniProtTranscription factor that functions as regulator of genes affecting cell wall organization and remodeling. Activates genes related to the primary cell wall and represses genes related to the secondary cell wall and expansins. Required for the regulation of longitudinal cell growth in stems, leaves, petioles, roots, flowers and siliques. {ECO:0000269|PubMed:24563287}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807009.15e-93transcription factor RAX2-like
SwissprotF4JSU02e-61MYB87_ARATH; Transcription factor MYB87
SwissprotQ9M2Y93e-61RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A2T7EJP51e-91A0A2T7EJP5_9POAL; Uncharacterized protein
TrEMBLA0A2T8KMA01e-91A0A2T8KMA0_9POAL; Uncharacterized protein
STRINGXP_008377938.11e-63(Malus domestica)
STRINGOPUNC12G18070.14e-64(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.17e-64myb domain protein 68
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Fujiwara S, et al.
    Chimeric repressor analysis identifies MYB87 as a possible regulator of morphogenesis via cell wall organization and remodeling in Arabidopsis.
    Biotechnol. Lett., 2014. 36(5): p. 1049-57
    [PMID:24563287]
  3. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  4. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]