PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04862.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 386aa    MW: 40152.7 Da    PI: 6.9964
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04862.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.53.2e-15197243455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++ErrRR++iN++f eL +++P +     kK++Ka+iL  Av+Y+++Lq
  Pahal.C04862.1 197 DHIIAERRRREKINQRFIELSTVIPGL-----KKMDKATILGDAVKYVRELQ 243
                     5999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.955193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-19197252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-13198243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-17198252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.76E-16198247No hitNo description
SMARTSM003535.1E-17199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MDRHMEDSST FLQWAMNQLH HQHPSAAAAA PAYQDGAGAG SSGGAGDREA IFPSLHALRS  60
GACQTQSHSQ PVAASVRVRD LTVQVDHLTN SSSSGDSPGA GGAAMDHDAA AGWSPHTARS  120
RTTGLGGGSN SRPVSWNFSA ASAQPTCESG GVGVVALPDA AMAPRVQLAS AGRRGGSNAG  180
PAAATAAASS SPGPVQDHII AERRRREKIN QRFIELSTVI PGLKKMDKAT ILGDAVKYVR  240
ELQEKVKTLE EDGAHSAGGS SIQSAVLVKK QCHLPDDEAM ASSNGAAAGG VQLPEIEARL  300
SEKSVLLRIH CYNARGLLVR VISEVEQMHL SITHTNVMPF PASTAIITIT AKVEEGFTAT  360
VDEIVRSINS VLHQHYSSSS EETRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-14197252863Transcription factor MYC2
5gnj_B7e-14197252863Transcription factor MYC2
5gnj_E7e-14197252863Transcription factor MYC2
5gnj_F7e-14197252863Transcription factor MYC2
5gnj_G7e-14197252863Transcription factor MYC2
5gnj_I7e-14197252863Transcription factor MYC2
5gnj_M7e-14197252863Transcription factor MYC2
5gnj_N7e-14197252863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201206ERRRRE
2202207RRRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808672.10.0transcription factor bHLH25-like
RefseqXP_025808673.10.0transcription factor bHLH25-like
RefseqXP_025808674.10.0transcription factor bHLH25-like
RefseqXP_025808675.10.0transcription factor bHLH25-like
TrEMBLA0A2S3HFP90.0A0A2S3HFP9_9POAL; Uncharacterized protein
STRINGPavir.J30022.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-44bHLH family protein