PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C04788.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NF-YA | ||||||||
Protein Properties | Length: 332aa MW: 35568.1 Da PI: 8.9211 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 97.2 | 1.8e-30 | 166 | 222 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++p+YVNaKQy++Il+RR +Rak+e+e++l k+rkpylheSRh hAlrR+RgsgGrF Pahal.C04788.3 166 EAPIYVNAKQYEGILRRRRARAKAERENRL-VKARKPYLHESRHLHALRRARGSGGRF 222 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 9.1E-35 | 164 | 225 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.744 | 165 | 225 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.0E-27 | 168 | 222 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 5.6E-23 | 168 | 190 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 170 | 190 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 5.6E-23 | 199 | 222 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MMSFRSHEGF GQVHAGASSN GAQLPWWAPA PQLLLYGEAL GQGKVPPEAA PCREARFQVV 60 PGAQAPLGPP VPPPPPAKAA AERGLPEVLK FSVAQGKGEK GSEHSATVAL PSPFVIYNGH 120 FELGLGQSTV SANNPYADQH CGLLSPYPVG ATPGGCMRIP LNMPTEAPIY VNAKQYEGIL 180 RRRRARAKAE RENRLVKARK PYLHESRHLH ALRRARGSGG RFLNTKKESN AKDAGGDGKA 240 MVSNSLMRQV ASPSSEIQQS DLGNPSSVSS LSGSEVSSIY DHEDVDHYHS FDHLRTPFFT 300 PLPSIMDSEH GVGNPFKWPT ASEGCCDLLR A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 4e-17 | 165 | 230 | 1 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809770.1 | 0.0 | nuclear transcription factor Y subunit A-10-like | ||||
Refseq | XP_025809771.1 | 0.0 | nuclear transcription factor Y subunit A-10-like | ||||
Refseq | XP_025809772.1 | 0.0 | nuclear transcription factor Y subunit A-10-like | ||||
Refseq | XP_025809773.1 | 0.0 | nuclear transcription factor Y subunit A-10-like | ||||
Refseq | XP_025809774.1 | 0.0 | nuclear transcription factor Y subunit A-10-like | ||||
TrEMBL | A0A2S3HFI2 | 0.0 | A0A2S3HFI2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J24924.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.3 | 9e-27 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C04788.3 |