PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C04770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | TCP | ||||||||
Protein Properties | Length: 294aa MW: 30812.6 Da PI: 7.505 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.3 | 2.8e-34 | 37 | 181 | 1 | 100 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssssasn 84 aag+kdrhsk+ T++g+RdRRvRls+++a++f+d+qd+LG+d++sk+ieWL+++a ai+el+++ ss++a + +++++s++++ Pahal.C04770.1 37 AAGGKDRHSKVVTARGLRDRRVRLSVPTAIQFYDIQDRLGVDQPSKAIEWLIRAAAGAIDELPSLdcsfalpagaaSSPPA--AGDDAEVSTSET 129 6899*************************************************************9999998876533333..222223332222 PP TCP 85 sssg....................................kaaksaakskks 100 s+s+ +a+ s+++++++ Pahal.C04770.1 130 SKSSvlslangptgtaaaaahqanhayngnagafaellhcSANDSKPTQQQQ 181 2222344444444454444444445555566666666543222222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.3E-33 | 39 | 172 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.375 | 40 | 98 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MEEVGMERTA CKRPRAALDG GTAAAAAWRT CRVARAAAGG KDRHSKVVTA RGLRDRRVRL 60 SVPTAIQFYD IQDRLGVDQP SKAIEWLIRA AAGAIDELPS LDCSFALPAG AASSPPAAGD 120 DAEVSTSETS KSSVLSLANG PTGTAAAAAH QANHAYNGNA GAFAELLHCS ANDSKPTQQQ 180 QQQPTLAYYA AQLPSSHAAP AMSFETMPQL AFLQEQPHPA VGFDRGTLQS NVTVAAPLWP 240 PSQQACFLQR FAAAPIDAAG LPFFLGGGTA APPVTVNAEP RLQLWDFKQE RKT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-23 | 45 | 99 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 5e-23 | 45 | 99 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810054.1 | 0.0 | transcription factor PCF8-like | ||||
Swissprot | A2ZMR9 | 5e-93 | PCF8_ORYSI; Transcription factor PCF8 | ||||
TrEMBL | A0A2S3HFS2 | 0.0 | A0A2S3HFS2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca02949.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11553 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 6e-30 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C04770.1 |