PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04702.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 439aa    MW: 46006.6 Da    PI: 5.6634
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04702.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.42.2e-17261307455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++ +L+el+P++      K +Ka++L +A+eY+ksLq
  Pahal.C04702.3 261 VHNLSERRRRDRINEKMKTLQELIPHC-----NKTDKASMLDEAIEYLKSLQ 307
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.9E-20254311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.12E-19254311No hitNo description
SuperFamilySSF474596.67E-20255312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.559257306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-15261307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-19263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MNQYVPDWSS SMGDAFATLN GGDDDGLMEL LWCNGHVVMQ SQAPRKPTRP EKVAAAAAAA  60
AAQDDEAAAW FQYPAEDALE RDLFTELFGE AQAADAGSGR ACKEEAECGG EAAARRSGLM  120
PPPWEKECPG ELGDVAAGGE CTATATEAGE SSMLTVGSSF CGSNHVQTPR ARATCGGAAA  180
PGAAGKAGGS ARDAATVTSS SMRPRSCTTK AGQPSATAHR SGKRRPSDAT ETEDAEFESA  240
DATCEPAQKL TTAKRRRAAE VHNLSERRRR DRINEKMKTL QELIPHCNKT DKASMLDEAI  300
EYLKSLQLQL QMGGGMAAAA APVMFPAGVH QYMQRMVAPS HVASMPRMPF MAPPAVQSPP  360
GADPYARYLA VDHLQPPPPP PAPMGMGFYQ QQQSSAPPPP AVPAGSLPAA TSRTSPPDGP  420
LHKKYESCGM PEIQGITS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254269RRRAAEVHNLSERRRR
2265270ERRRRD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0558762e-69BT055876.1 Zea mays full-length cDNA clone ZM_BFc0002C15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805663.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X3
TrEMBLA0A2S3HFD20.0A0A2S3HFD2_9POAL; Uncharacterized protein
STRINGSi022196m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-28phytochrome interacting factor 3