PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C04667.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 201aa MW: 21897.1 Da PI: 4.9841 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 49.3 | 1e-15 | 122 | 175 | 4 | 57 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 k+ rr+ +NRe+ArrsR+RK+ + Le v +L++eN +L k+l ++++++ Pahal.C04667.3 122 TKKMRRMLSNRESARRSRKRKQVHMTDLESQVSKLTSENASLLKRLADMTQKYK 175 6999***********************************999966666665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.1E-17 | 119 | 183 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.277 | 121 | 173 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 8.9E-14 | 122 | 175 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.9E-14 | 123 | 175 | No hit | No description |
SuperFamily | SSF57959 | 6.88E-13 | 123 | 174 | No hit | No description |
CDD | cd14702 | 1.41E-18 | 124 | 174 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 126 | 141 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MAGAGADDDV VEVSCGGDGR DPGAYAAVLK RRLDLYCAAV AKSMEAKSQE SSLGYPNSQA 60 SDTSQLISQA SFDDDGDGAT IVTNSNIIDH EDFRGNPANS GTSKEQSDDD GDLEENTDPA 120 NTKKMRRMLS NRESARRSRK RKQVHMTDLE SQVSKLTSEN ASLLKRLADM TQKYKDATLD 180 NRNLTVDVET MRRKVWGIVK * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 141 | RRSRKRK |
2 | 135 | 142 | RRSRKRKQ |
3 | 137 | 142 | SRKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042103 | 0.0 | BT042103.1 Zea mays full-length cDNA clone ZM_BFb0133G19 mRNA, complete cds. | |||
GenBank | KJ727504 | 0.0 | KJ727504.1 Zea mays clone pUT5363 bZIP transcription factor (bZIP111) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805357.1 | 1e-140 | light-inducible protein CPRF2-like | ||||
Swissprot | Q99090 | 3e-27 | CPRF2_PETCR; Light-inducible protein CPRF2 | ||||
TrEMBL | A0A2S3HF93 | 1e-145 | A0A2S3HF93_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca02738.1.p | 1e-127 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28770.3 | 3e-25 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C04667.3 |
Publications ? help Back to Top | |||
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