PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C04667.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 284aa MW: 30698.9 Da PI: 4.8915 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 48.5 | 1.9e-15 | 122 | 175 | 4 | 57 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 k+ rr+ +NRe+ArrsR+RK+ + Le v +L++eN +L k+l ++++++ Pahal.C04667.2 122 TKKMRRMLSNRESARRSRKRKQVHMTDLESQVSKLTSENASLLKRLADMTQKYK 175 6999***********************************999966666665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.1E-17 | 119 | 183 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.277 | 121 | 173 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.1E-13 | 122 | 175 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.41E-12 | 123 | 174 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 7.1E-14 | 123 | 175 | No hit | No description |
CDD | cd14702 | 6.60E-18 | 124 | 174 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 126 | 141 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF12498 | 1.4E-12 | 190 | 233 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MAGAGADDDV VEVSCGGDGR DPGAYAAVLK RRLDLYCAAV AKSMEAKSQE SSLGYPNSQA 60 SDTSQLISQA SFDDDGDGAT IVTNSNIIDH EDFRGNPANS GTSKEQSDDD GDLEENTDPA 120 NTKKMRRMLS NRESARRSRK RKQVHMTDLE SQVSKLTSEN ASLLKRLADM TQKYKDATLD 180 NRNLTVDVET MRRKVNIAEE AVRRLTGTTL LLSTTCDKTA SSMRLTSCPS DAAILLTSGE 240 MGTKPDSLQR VASLEDLQKR IHRDSIHSEI ASTFSDPEAL ANG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 141 | RRSRKRK |
2 | 135 | 142 | RRSRKRKQ |
3 | 137 | 142 | SRKRKQ |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042103 | 0.0 | BT042103.1 Zea mays full-length cDNA clone ZM_BFb0133G19 mRNA, complete cds. | |||
GenBank | KJ727504 | 0.0 | KJ727504.1 Zea mays clone pUT5363 bZIP transcription factor (bZIP111) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805357.1 | 0.0 | light-inducible protein CPRF2-like | ||||
TrEMBL | A0A2S3HF97 | 0.0 | A0A2S3HF97_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca02738.1.p | 1e-170 | (Panicum virgatum) | ||||
STRING | Pavir.Cb00258.1.p | 1e-170 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28770.2 | 4e-30 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C04667.2 |