PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04640.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 329aa    MW: 34412 Da    PI: 9.7401
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04640.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.32.4e-17154202255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     rr+hn  E+rRR++iN++f +L++l+P +      K + a++L ++++Y+ksLq
  Pahal.C04640.1 154 RRSHNLTEKRRRNKINERFKTLQQLVPGC-----DKSNQASTLDQTIQYMKSLQ 202
                     99**************************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-19150212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-16151206No hitNo description
PROSITE profilePS5088818.12152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-21154209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-15154202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-16158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MNCPGHAAGP RWCYPDDSGE AAGGDAVDMI ADYYSTADDL FELVSKRGGG GAGGAPGLRT  60
MQPAAESCHW SPPPEVRFEP PSEGQMAAWL GTIVRGEELA VDDGGGRDVP AAKKRSSDNA  120
STTTDSKEKL IPVTEGIGTM QEMRKAPASG GSSRRSHNLT EKRRRNKINE RFKTLQQLVP  180
GCDKSNQAST LDQTIQYMKS LQQHVQAMSV GPARPAAAAA VPVVQPRYAP PEAPPVAVQM  240
MPAAPVILAP APTTMVPFGA MLHQMPHYPA AVPVMMPASA SAALLSYPAA PPPRAAAVEP  300
GGAGSSASRR HGSSSRKGKG GRRLRQKH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308323RRHGSSSRKGKGGRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806979.10.0putative transcription factor bHLH056
TrEMBLA0A2S3HF900.0A0A2S3HF90_9POAL; Uncharacterized protein
STRINGPavir.Ca02790.1.p1e-100(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.12e-19phytochrome interacting factor 3-like 5