PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C04637.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 165aa MW: 17764.1 Da PI: 6.9209 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.7 | 5e-09 | 131 | 157 | 4 | 30 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 a n E+rRR riN++f L++l+P + Pahal.C04637.1 131 APNLTEKRRRCRINEKFKILQQLVPGC 157 67999********************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.02E-8 | 124 | 159 | No hit | No description |
SuperFamily | SSF47459 | 9.95E-8 | 127 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.22 | 127 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.0E-8 | 128 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.7E-7 | 131 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MMNSQGSGPA HYNYSVDPGK ATGCGRNGGG ADEGFLDMFG DRRSSGDLFD LVWQGRAGAT 60 SSIMEVQPSH LIPSLPPSEG EMAAWLCPVV RGDELVVTGP DDPTIPGDFD SMGERRKKAI 120 GGVRRSHHSE APNLTEKRRR CRINEKFKIL QQLVPGCDKV VLIL* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002442458.1 | 3e-19 | transcription factor APG | ||||
TrEMBL | A0A2T8KLV9 | 1e-114 | A0A2T8KLV9_9POAL; Uncharacterized protein | ||||
STRING | Si024311m | 6e-57 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16578 | 11 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 1e-09 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C04637.1 |