PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04627.4
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 1205aa    MW: 134065 Da    PI: 7.8912
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04627.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.37.3e-1910221086259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS....STTEEEEEEES--SS- CS
            WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae....dpkvveitYegeHnhe 59  
                      +Dgy+WrKYGqK + +++fpr YYrCt++   +C+++k+v++++     +p +  ++Y ++H+++
  Pahal.C04627.4 1022 RDGYQWRKYGQKRIPETQFPRCYYRCTFHrerSCRATKQVQQCSVgdlcNPPLYGVMYFNQHTCD 1086
                      7**************************998999********987433337889999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525401.27E-51186459IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3003.0E-15202376IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009312.8E-49219486IPR002182NB-ARC
PRINTSPR003641.5E-13225240No hitNo description
PRINTSPR003641.5E-13297311No hitNo description
PRINTSPR003641.5E-13394408No hitNo description
SuperFamilySSF520588.16E-18521899IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.5E-14557848IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003641.5E-13696712No hitNo description
Gene3DG3DSA:2.20.25.809.4E-2110131087IPR003657WRKY domain
SuperFamilySSF1182908.63E-1910161087IPR003657WRKY domain
SMARTSM007746.8E-2710211087IPR003657WRKY domain
PROSITE profilePS5081115.05510231065IPR003657WRKY domain
PfamPF031066.1E-2010231086IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1205 aa     Download sequence    Send to blast
MAKQSAACML LGLGEISSME APASPLDGTI LKLPGKLDRL LRHGCALPKG AADEIPLIKL  60
DLEKIKAISS NLQEDDHAMM VRCWRKEVRE LSYDMEDFID QYEHAAAMNC ASRSIRGREI  120
ITRRRKNKTS LPWIREKLRQ RLWMANKIRE FSERAQEALE RHRLYNLDAI AGSASLRCID  180
DAYPTSWNGT PCGEDKAYVG IDAAMENLEE LLSMTHDQEH QKLKVVSVVG FGGIGKTTLA  240
MELYRKLGQQ FECRAFVRTA QKPDMRRIFI SMLSQVRPHQ PPDNWTVHGL ISTIRTHLQD  300
KRYLIIVEDL WTTSTWDIVK HALPENNCCS RILTTTEIED LALQSCDHDP KYVYKMQPLG  360
EDNSRKLFFS SVFGPQDECP PELREISHDI IRKCGGLPLA IVTVANILSS QPGKQDRWDY  420
VNKAIGYSLL TNPTWEGMKQ IFDLSYNNLP QHLKACILYT GLYEEDIIIW KDDLVNQWIA  480
EGFIQATGGQ DKKEIARSFF DRLINGKLIL PLDVNRNGEV LSCTVHHMVL NLVIRCKSIE  540
ENFVTAIHHS QATTTLADKV RRLSLQFGNA EDAITPTNMR LSHVRTLAFS GLFKCLPSVV  600
QFRLLQVLVL HFWADKDSIS FDITRISELF RLRYLKVTTN VTLELHPQMR GLKSLETLKI  660
DARVCAVPSD IVLLPGLLHL SLPAETSLPN WIGCMTPLRT LGYFDLSSNS IQNVKSLVML  720
TNLGDLQLTC STVQPENLNS KLQFVLTTIV GRLSNLKSLT LAPRAPSYAK SIGATGMTVH  780
GGFSSLSPAP SLLRSLEVSP QICIFFYTPK SIGQLRKLCI LKFGVRKIDR DGIDVLRGLP  840
ALAVLSLYVQ TKPAARIVIG KTGFPVIKYF KLKCCDPFLK FEEGAMPNLL KLKLAFNASN  900
ADQQSTIPVG IEYLSELKEV SAKIGGVGPE ESHRRPAELA FRDAFRVHAS VQRVNVQCVK  960
QIIECKDDQS SLTTVEYSPA PAGTSLLSSG WAHVSVAASP YEPQTARWNC PRERTVTASP  1020
HRDGYQWRKY GQKRIPETQF PRCYYRCTFH RERSCRATKQ VQQCSVGDLC NPPLYGVMYF  1080
NQHTCDTMAG CEPEAAANPA MPAGLSGAGL VARQGGSLSL GLDERGVQEE HERQAFVSSL  1140
VYAGDDDELP QSSAGGRGTT SSAVTFDVAK GGASCAGAGG DAAVPETEAG DSPGVEDWYL  1200
SRPE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C1e-42190740152706Disease resistance RPP13-like protein 4
6j5t_F1e-42190740152706Disease resistance RPP13-like protein 4
6j5t_G1e-42190740152706Disease resistance RPP13-like protein 4
6j5t_L1e-42190740152706Disease resistance RPP13-like protein 4
6j5t_O1e-42190740152706Disease resistance RPP13-like protein 4
6j5u_A1e-42190740152706Disease resistance RPP13-like protein 4
6j5v_A1e-42190740152706Disease resistance RPP13-like protein 4
6j5w_A1e-42190740152706Disease resistance RPP13-like protein 4
6j6i_C1e-42190740152706Disease resistance RPP13-like protein 4
6j6i_F1e-42190740152706Disease resistance RPP13-like protein 4
6j6i_G1e-42190740152706Disease resistance RPP13-like protein 4
6j6i_L1e-42190740152706Disease resistance RPP13-like protein 4
6j6i_O1e-42190740152706Disease resistance RPP13-like protein 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807801.10.0putative disease resistance RPP13-like protein 3 isoform X1
TrEMBLA0A2S3HF740.0A0A2S3HF74_9POAL; Uncharacterized protein
STRINGPavir.Ca02782.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.11e-16WRKY DNA-binding protein 62