PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04627.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 1187aa    MW: 132273 Da    PI: 7.9039
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04627.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.37.2e-1910041068259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS....STTEEEEEEES--SS- CS
            WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae....dpkvveitYegeHnhe 59  
                      +Dgy+WrKYGqK + +++fpr YYrCt++   +C+++k+v++++     +p +  ++Y ++H+++
  Pahal.C04627.3 1004 RDGYQWRKYGQKRIPETQFPRCYYRCTFHrerSCRATKQVQQCSVgdlcNPPLYGVMYFNQHTCD 1068
                      7**************************998999********987433337889999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525401.21E-51168441IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3002.9E-15184358IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009312.7E-49201468IPR002182NB-ARC
PRINTSPR003641.4E-13207222No hitNo description
PRINTSPR003641.4E-13279293No hitNo description
PRINTSPR003641.4E-13376390No hitNo description
SuperFamilySSF520588.16E-18503881IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.5E-14539830IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003641.4E-13678694No hitNo description
Gene3DG3DSA:2.20.25.809.2E-219951069IPR003657WRKY domain
SuperFamilySSF1182908.5E-199981069IPR003657WRKY domain
SMARTSM007746.8E-2710031069IPR003657WRKY domain
PROSITE profilePS5081115.05510051047IPR003657WRKY domain
PfamPF031066.0E-2010051068IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1187 aa     Download sequence    Send to blast
MEAPASPLDG TILKLPGKLD RLLRHGCALP KGAADEIPLI KLDLEKIKAI SSNLQEDDHA  60
MMVRCWRKEV RELSYDMEDF IDQYEHAAAM NCASRSIRGR EIITRRRKNK TSLPWIREKL  120
RQRLWMANKI REFSERAQEA LERHRLYNLD AIAGSASLRC IDDAYPTSWN GTPCGEDKAY  180
VGIDAAMENL EELLSMTHDQ EHQKLKVVSV VGFGGIGKTT LAMELYRKLG QQFECRAFVR  240
TAQKPDMRRI FISMLSQVRP HQPPDNWTVH GLISTIRTHL QDKRYLIIVE DLWTTSTWDI  300
VKHALPENNC CSRILTTTEI EDLALQSCDH DPKYVYKMQP LGEDNSRKLF FSSVFGPQDE  360
CPPELREISH DIIRKCGGLP LAIVTVANIL SSQPGKQDRW DYVNKAIGYS LLTNPTWEGM  420
KQIFDLSYNN LPQHLKACIL YTGLYEEDII IWKDDLVNQW IAEGFIQATG GQDKKEIARS  480
FFDRLINGKL ILPLDVNRNG EVLSCTVHHM VLNLVIRCKS IEENFVTAIH HSQATTTLAD  540
KVRRLSLQFG NAEDAITPTN MRLSHVRTLA FSGLFKCLPS VVQFRLLQVL VLHFWADKDS  600
ISFDITRISE LFRLRYLKVT TNVTLELHPQ MRGLKSLETL KIDARVCAVP SDIVLLPGLL  660
HLSLPAETSL PNWIGCMTPL RTLGYFDLSS NSIQNVKSLV MLTNLGDLQL TCSTVQPENL  720
NSKLQFVLTT IVGRLSNLKS LTLAPRAPSY AKSIGATGMT VHGGFSSLSP APSLLRSLEV  780
SPQICIFFYT PKSIGQLRKL CILKFGVRKI DRDGIDVLRG LPALAVLSLY VQTKPAARIV  840
IGKTGFPVIK YFKLKCCDPF LKFEEGAMPN LLKLKLAFNA SNADQQSTIP VGIEYLSELK  900
EVSAKIGGVG PEESHRRPAE LAFRDAFRVH ASVQRVNVQC VKQIIECKDD QSSLTTVEYS  960
PAPAGTSLLS SGWAHVSVAA SPYEPQTARW NCPRERTVTA SPHRDGYQWR KYGQKRIPET  1020
QFPRCYYRCT FHRERSCRAT KQVQQCSVGD LCNPPLYGVM YFNQHTCDTM AGCEPEAAAN  1080
PAMPAGLSGA GLVARQGGSL SLGLDERGVQ EEHERQAFVS SLVYAGDDDE LPQSSAGGRG  1140
TTSSAVTFDV AKGGASCAGA GGDAAVPETE AGDSPGVEDW YLSRPE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C1e-42172722152706Disease resistance RPP13-like protein 4
6j5t_F1e-42172722152706Disease resistance RPP13-like protein 4
6j5t_G1e-42172722152706Disease resistance RPP13-like protein 4
6j5t_L1e-42172722152706Disease resistance RPP13-like protein 4
6j5t_O1e-42172722152706Disease resistance RPP13-like protein 4
6j5u_A1e-42172722152706Disease resistance RPP13-like protein 4
6j5v_A1e-42172722152706Disease resistance RPP13-like protein 4
6j5w_A1e-42172722152706Disease resistance RPP13-like protein 4
6j6i_C1e-42172722152706Disease resistance RPP13-like protein 4
6j6i_F1e-42172722152706Disease resistance RPP13-like protein 4
6j6i_G1e-42172722152706Disease resistance RPP13-like protein 4
6j6i_L1e-42172722152706Disease resistance RPP13-like protein 4
6j6i_O1e-42172722152706Disease resistance RPP13-like protein 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807801.10.0putative disease resistance RPP13-like protein 3 isoform X1
TrEMBLA0A2S3HFA80.0A0A2S3HFA8_9POAL; Uncharacterized protein
STRINGPavir.Ca02782.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.11e-16WRKY DNA-binding protein 62