PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C04512.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 333aa MW: 37506.5 Da PI: 8.4128

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C04512.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.9	3.9e-18	9	97	2	99
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 fk + + +++g ++p kf+++++g+ +++ l+ +sg++W + + +k++++ +l +GW++Fvka++L+e+D ++F+ g+s+f v+vf+ Pahal.C04512.2 9 FKLM-T-GDFAKG-TSIPEKFTKNFKGQITGG--FELKAPSGKTWHISV--DKSGDELFLMSGWEDFVKAHELQENDLLLFTCCGNSSF--QVQVFE 96 5555.3.334444.69****9998887787..7777*******..*****************************9999999..999987 PP S CS B3 99 k 99 + Pahal.C04512.2 97 A 97 6 PP
2	B3	41.1	3.2e-13	227	323	3	99
EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS B3 3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 +vl++++ ++ + l++p +fa++h k +s +++l + +W v + y+ + r + +Fv++n+L+egD++vF+l++ ++ ++ v Pahal.C04512.2 227 TVLKKKHIQRNkNSLIIPCRFAADHLDK--RSHDIILHRpNRKGKWLVSYYYSCYM-RSFQNLAFFKFVRDNKLCEGDICVFELMKGkRRVTMAV 318 55555555555478*********544..56699999945559**554444.4445667899**************997769999999 PP EEE-S CS B3 95 kvfrk 99 +v+rk Pahal.C04512.2 319 HVIRK 323 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.75E-21	3	100	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	13.549	5	98	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	8.9E-21	7	100	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.63E-17	7	95	No hit	No description
Pfam	PF02362	9.0E-16	8	97	IPR003340	B3 DNA binding domain
SMART	SM01019	5.8E-11	8	98	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	6.4E-18	217	323	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.85E-16	218	323	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.69E-12	223	322	No hit	No description
Pfam	PF02362	1.3E-10	225	323	IPR003340	B3 DNA binding domain
SMART	SM01019	0.001	225	324	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.742	226	324	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MDVSTIRFFK LMTGDFAKGT SIPEKFTKNF KGQITGGFEL KAPSGKTWHI SVDKSGDELF 60 LMSGWEDFVK AHELQENDLL LFTCCGNSSF QVQVFEASGC ERVSSIFGNR IGPDMCKHVN 120 NIAGQHGMHY SQNDSEDTTT PSQLVGSPHN ASSSKKSSGK TKPSEPENPN TSNFIVNHSA 180 IGDEDSDDEC ANSNCYYSMF ANRLRDEEKE EIIGLASIRP NNPAFVTVLK KKHIQRNKNS 240 LIIPCRFAAD HLDKRSHDII LHRPNRKGKW LVSYYYSCYM RSFQNLAFFK FVRDNKLCEG 300 DICVFELMKG KRRVTMAVHV IRKASDRFIL VG*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808344.1	0.0	B3 domain-containing protein Os12g0592300-like
Swissprot	Q2QMT5	1e-130	Y1209_ORYSJ; B3 domain-containing protein LOC_Os12g40090
TrEMBL	A0A2S3HF07	0.0	A0A2S3HF07_9POAL; Uncharacterized protein
STRING	Pavir.Cb00511.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	2e-21	B3 family protein

Link Out ? help Back to Top
Phytozome	Pahal.C04512.2