PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C04509.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 417aa MW: 44815 Da PI: 7.5997

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C04509.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100	1.6e-31	98	151	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Pahal.C04509.1 98 PRMRWTTALHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 151 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.05E-15	96	151	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.2E-28	96	151	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.6E-23	98	151	IPR006447	Myb domain, plants
Pfam	PF00249	3.5E-7	99	150	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MSIRTSRATT MATPDLSLHI SPPSPPEAAG EMQAVEPRLL LGLELDTAAA KTDDAAAQRH 60 GGLQAQQQRL LHQPSQTAHG FKKSSGGGGG RRRSARAPRM RWTTALHAHF VHAVELLGGH 120 ERATPKSVLE LMNVKDLTLA HVKSHLQMYR TVKGTDRSCV AGLGQQARDM AFLRRGAGEV 180 DGFDVFNSSR SVNTTTTFNN YTNTARRSWS PSGEQQQRLD HQEAAAAACA WIHAHQLLQS 240 CGSDELTTLQ PPPCRLRPAA ADRLLMTTTT TEQSHAQQQG SKVGEQDHHG QGAVAAHHLA 300 DEAREKLPSQ PPPHDHHHAG SGLFQRPSPT NNTSSSGDTV SSPEWLQQRH YCSDGGGMSV 360 GMAAGLLPAP PPPSLEMSLG RQGWQMEQHA GVGVEFEFES SPPAPAPNEL TMLKCL*

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MSIRTSRATT MATPDLSLHI SPPSPPEAAG EMQAVEPRLL LGLELDTAAA KTDDAAAQRH  60
GGLQAQQQRL LHQPSQTAHG FKKSSGGGGG RRRSARAPRM RWTTALHAHF VHAVELLGGH  120
ERATPKSVLE LMNVKDLTLA HVKSHLQMYR TVKGTDRSCV AGLGQQARDM AFLRRGAGEV  180
DGFDVFNSSR SVNTTTTFNN YTNTARRSWS PSGEQQQRLD HQEAAAAACA WIHAHQLLQS  240
CGSDELTTLQ PPPCRLRPAA ADRLLMTTTT TEQSHAQQQG SKVGEQDHHG QGAVAAHHLA  300
DEAREKLPSQ PPPHDHHHAG SGLFQRPSPT NNTSSSGDTV SSPEWLQQRH YCSDGGGMSV  360
GMAAGLLPAP PPPSLEMSLG RQGWQMEQHA GVGVEFEFES SPPAPAPNEL TMLKCL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	8e-16	99	153	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-16	99	153	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-16	99	153	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-16	99	153	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU968468	1e-83	EU968468.1 Zea mays clone 321144 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805465.1	0.0	uncharacterized protein LOC112884302
TrEMBL	A0A2S3HF18	0.0	A0A2S3HF18_9POAL; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3742	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.2	3e-36	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pahal.C04509.1