PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04497.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SBP
Protein Properties Length: 296aa    MW: 31782.3 Da    PI: 8.8489
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04497.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1322e-4152128278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     C v+gC++dls+++eyhrrh+vCe+hsk+pvv+v g+eqrfCqqCsrfh+lsefDe+krsCr+rL++hn+rrrk+q+
  Pahal.C04497.2  52 CSVDGCRSDLSRCREYHRRHRVCEAHSKTPVVVVGGQEQRFCQQCSRFHMLSEFDEGKRSCRKRLDGHNRRRRKPQH 128
                     **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.5E-3346113IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.4749126IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-3951130IPR004333Transcription factor, SBP-box
PfamPF031105.9E-3152125IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MLSFAGPSSS SSAAAEARLH DFAAGLAQRA RPAGAAGAGR RSRSAGGGAE ACSVDGCRSD  60
LSRCREYHRR HRVCEAHSKT PVVVVGGQEQ RFCQQCSRFH MLSEFDEGKR SCRKRLDGHN  120
RRRRKPQHDL ANLGGFFPYH QVNQFEIYPQ TIPTARQDSD TMNLVDPQPP FSISFSRTPK  180
QFPFPQDGGG LHSASRHGHF LVQDRNHTGS SVCNNDLSGT LGPECALSLL SSSLHHPSPV  240
GHTQIASALS RIASTSQQVA ATAVTTALAS GGGHHVFVPD AALEDPSQAL PFPWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-2744125384squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108125KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826748.10.0putative squamosa promoter-binding-like protein 19
SwissprotQ2R3Y14e-93SPL19_ORYSJ; Putative squamosa promoter-binding-like protein 19
TrEMBLA0A2T8I9420.0A0A2T8I942_9POAL; Uncharacterized protein
STRINGPavir.Hb01173.1.p1e-158(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-40SBP family protein