PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C04435.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 339aa MW: 34400.5 Da PI: 8.8753

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C04435.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.8	4.7e-38	108	165	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +l+cprCdstntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+n k+s Pahal.C04435.1 108 TLRCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNTKRS 165 679***************************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-32	90	161	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-31	109	163	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.385	109	163	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	111	147	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MVFSSLPIFL DPPNWGQMQM QQQQPPLQCL LGGGGGSDHH HLMPPPSGLA PLPGGPADTA 60 ASAPAGGNSS TSMQTAAGVA AAGAQPRPVV SMAERARLAR VPLPEPGTLR CPRCDSTNTK 120 FCYFNNYSLS QPRHFCKACR RYWTRGGALR NVPVGGGCRR NTKRSSKKSS RGGQGGGAGA 180 TAATSSSSTT STTATSTTTT SAAMAAAEAI ASMQAQLPHL GLPPAAAAAA LEASLEGYHH 240 YLPLQMQPQF LQQAGLHGYH FADDGSGVLA DGFPRGVVAS GLLAQLAAVK MEEHSSGGGG 300 GAVAAHEQSY WPGSTGGGSG WPAEFLSGFS SSSSGNVL*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00281	DAP	Transfer from AT2G28810	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582419	0.0	KC582419.1 Sorghum bicolor dof28 protein (dof28) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808235.1	0.0	dof zinc finger protein DOF2.2-like
TrEMBL	A0A2S3HEQ9	0.0	A0A2S3HEQ9_9POAL; Uncharacterized protein
TrEMBL	A0A2T7EI81	0.0	A0A2T7EI81_9POAL; Uncharacterized protein
STRING	Pavir.J05047.1.p	1e-166	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	6e-40	Dof family protein

Link Out ? help Back to Top
Phytozome	Pahal.C04435.1