PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C04388.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 174aa MW: 17741.3 Da PI: 8.256 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.2 | 0.00034 | 31 | 73 | 11 | 54 |
HHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 R+ + f+eL +lP+ + ++++ s ei+ A+e +k L Pahal.C04388.1 31 GHRRTVSALFAELGAMLPNdL--PTNRPASREEIVDAATERVKVL 73 568889999**********76..69999***********988866 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MAGGGLLPLD LSLATAGASA SAGERRAGPR GHRRTVSALF AELGAMLPND LPTNRPASRE 60 EIVDAATERV KVLEDTAAVL ETYRAVRGAG AGAAPRPEVA VAVGTVCFCA RLPAPRPGSL 120 TRVLEAFHRR GVEVLVATVA RHGHGGAAVV TVNAAAAPPE VLELIRADIA DIY* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU965379 | 3e-60 | EU965379.1 Zea mays clone 285663 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808264.1 | 1e-116 | uncharacterized protein LOC112886545 | ||||
TrEMBL | A0A2S3HEQ2 | 1e-114 | A0A2S3HEQ2_9POAL; Uncharacterized protein | ||||
STRING | Si025174m | 1e-73 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9141 | 19 | 31 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C04388.1 |