PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C04387.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 180aa MW: 18671.6 Da PI: 11.5614 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.8 | 2.5e-05 | 35 | 78 | 1 | 46 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLek 46 rrr e+ rrRR+r+ ++eL +lP+ + +s+ + i+ Pahal.C04387.1 35 RRRRDREVQRRRRARVSALYAELGAMLPSlP---TSRPATQEKIVDA 78 6777899**********************55...6666666666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.47E-7 | 33 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.591 | 34 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-4 | 35 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MATAAAAGGL PLELSLDTVA APAAATTAES AVERRRRRDR EVQRRRRARV SALYAELGAM 60 LPSLPTSRPA TQEKIVDAAK ARVEALEDTA AALQACRGAP RPGREVALSC GTVTVSARLP 120 SPKPAGALRR VVEAFERRGA RVLMATMARH GGAVVVTVTA AAAALEVVEM IRADIASIN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 32 | 38 | ERRRRRD |
2 | 33 | 46 | RRRRRDREVQRRRR |
3 | 37 | 46 | RDREVQRRRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808654.1 | 1e-118 | uncharacterized protein LOC112886855 | ||||
TrEMBL | A0A2S3HEA9 | 1e-116 | A0A2S3HEA9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J14592.1.p | 3e-65 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9141 | 19 | 31 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C04387.1 |