PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04223.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 543aa    MW: 58648.6 Da    PI: 7.2325
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04223.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.82.7e-11104129126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C++++++GtC++G +CkF+H+
  Pahal.C04223.2 104 PGEPDCSYYLKFGTCRFGIKCKFNHP 129
                     5789*********************8 PP
2zf-CCCH27.17.2e-09252275326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     +e+C++++  G Ck+G  Ck+ H 
  Pahal.C04223.2 252 QEECKYYSTPGGCKFGKACKYLHL 275
                     699********************5 PP
3zf-CCCH33.28.6e-11299323226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C+f++rtG Ck+  +CkF+H+
  Pahal.C04223.2 299 GEKECPFYMRTGSCKFATNCKFHHP 323
                     7899********************9 PP
4zf-CCCH22.81.6e-07445471127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C++f ++G+Cky  +C+F+H++
  Pahal.C04223.2 445 PGQPECQHFVKSGFCKYRMKCRFHHPK 471
                     5789*********************96 PP
5zf-CCCH253.3e-08491516227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C ++ r+G CkyG++C F+H++
  Pahal.C04223.2 491 DQPVCTYYGRFGVCKYGPSCMFNHPF 516
                     6899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.5E-5103130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.896103131IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-8105129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-5108131IPR000571Zinc finger, CCCH-type
SMARTSM003560.015249276IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.727249277IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-6253275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4255274IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5297324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.896297325IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7299323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-5300325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001303322IPR000571Zinc finger, CCCH-type
SMARTSM003560.01444471IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.807444472IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-5448472IPR000571Zinc finger, CCCH-type
SMARTSM003560.0036489516IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.267489517IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5490517IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5491516IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MADADANTQP PDAAASPIAS ISPSSVGAAD ADADAIEKQL AGLGIAVAGG GGFPEPSGWD  60
DVPAPVPVGV AVASGDEVAG EKVQGPPPAA AGAADGKVRF PRRPGEPDCS YYLKFGTCRF  120
GIKCKFNHPS RKKKSSRARG SGSSGSGSNS SSNKTSSPDD DQAPREEYEG LVPDISDSVN  180
FDDKGSSSNP GNHRKTSYEV VDMKKGRMES KEKISEELEK GVYFKKLDET NITNQKGVKD  240
KRKETFSEGS AQEECKYYST PGGCKFGKAC KYLHLEGKEG KAEVENVELN FLGLPLRPGE  300
KECPFYMRTG SCKFATNCKF HHPDPSNVPS KEPVLEHENG DNPQQNVQGP SQPSVPIWPE  360
QRALNEQHVP FLAPAPSYTA GMIPPQGMYH SPDWTGYHQV PVNPYYPPAV PFPHFPAPHM  420
NHPMYKAADI PGHQQLPSDE YPERPGQPEC QHFVKSGFCK YRMKCRFHHP KSRQPAPLTG  480
LSPIGLPIKP DQPVCTYYGR FGVCKYGPSC MFNHPFNFGP PVPAAGPPLP GQYHPTPGNF  540
TV*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807656.10.0zinc finger CCCH domain-containing protein 65-like isoform X2
SwissprotQ2QTY20.0C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A2S3HD680.0A0A2S3HD68_9POAL; Uncharacterized protein
STRINGPavir.Cb01040.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.17e-59C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]