PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04223.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 546aa    MW: 59003.1 Da    PI: 7.3731
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04223.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.82.7e-11104129126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C++++++GtC++G +CkF+H+
  Pahal.C04223.1 104 PGEPDCSYYLKFGTCRFGIKCKFNHP 129
                     5789*********************8 PP
2zf-CCCH27.17.2e-09255278326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     +e+C++++  G Ck+G  Ck+ H 
  Pahal.C04223.1 255 QEECKYYSTPGGCKFGKACKYLHL 278
                     699********************5 PP
3zf-CCCH33.28.6e-11302326226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C+f++rtG Ck+  +CkF+H+
  Pahal.C04223.1 302 GEKECPFYMRTGSCKFATNCKFHHP 326
                     7899********************9 PP
4zf-CCCH22.81.6e-07448474127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C++f ++G+Cky  +C+F+H++
  Pahal.C04223.1 448 PGQPECQHFVKSGFCKYRMKCRFHHPK 474
                     5789*********************96 PP
5zf-CCCH253.3e-08494519227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C ++ r+G CkyG++C F+H++
  Pahal.C04223.1 494 DQPVCTYYGRFGVCKYGPSCMFNHPF 519
                     6899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.5E-5103130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.896103131IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-8105129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-5108131IPR000571Zinc finger, CCCH-type
SMARTSM003560.015252279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.727252280IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-6256278IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4258277IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5300327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.896300328IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7302326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-5303328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001306325IPR000571Zinc finger, CCCH-type
SMARTSM003560.01447474IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.807447475IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-5451475IPR000571Zinc finger, CCCH-type
SMARTSM003560.0036492519IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.267492520IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5493520IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5494519IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MADADANTQP PDAAASPIAS ISPSSVGAAD ADADAIEKQL AGLGIAVAGG GGFPEPSGWD  60
DVPAPVPVGV AVASGDEVAG EKVQGPPPAA AGAADGKVRF PRRPGEPDCS YYLKFGTCRF  120
GIKCKFNHPS RKKKSSRARG SGSSGSGSNS SSNKTSSPDD DQAPREEYEG LVPDISDSVN  180
FDDKGSSSNP GNHRKTSYEV VDMKKGRMES KEKISEELEK GVYFKKLDET NITNQKILKG  240
VKDKRKETFS EGSAQEECKY YSTPGGCKFG KACKYLHLEG KEGKAEVENV ELNFLGLPLR  300
PGEKECPFYM RTGSCKFATN CKFHHPDPSN VPSKEPVLEH ENGDNPQQNV QGPSQPSVPI  360
WPEQRALNEQ HVPFLAPAPS YTAGMIPPQG MYHSPDWTGY HQVPVNPYYP PAVPFPHFPA  420
PHMNHPMYKA ADIPGHQQLP SDEYPERPGQ PECQHFVKSG FCKYRMKCRF HHPKSRQPAP  480
LTGLSPIGLP IKPDQPVCTY YGRFGVCKYG PSCMFNHPFN FGPPVPAAGP PLPGQYHPTP  540
GNFTV*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807655.10.0zinc finger CCCH domain-containing protein 65-like isoform X1
SwissprotQ2QTY20.0C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A2S3HD320.0A0A2S3HD32_9POAL; Uncharacterized protein
STRINGPavir.Cb01040.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.14e-59C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]