PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04086.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 481aa    MW: 51561.4 Da    PI: 7.6856
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04086.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.7e-1595142148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g W++eEde+lv +  + G g+W+ +ar  g+ R++k+c++rw +yl
   Pahal.C04086.1  95 KGLWSPEEDEKLVAYMLRSGQGSWSDVARNAGLQRCGKSCRLRWINYL 142
                      678*******************************************97 PP
2Myb_DNA-binding51.91.8e-16148191146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+el+v +++ lG++ W+ Ia++++ gRt++++k++w++
   Pahal.C04086.1 148 RGAFSPQEEELIVSLHAILGNR-WSQIAARLP-GRTDNEIKNFWNS 191
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.02790142IPR017930Myb domain
SuperFamilySSF466892.81E-2893189IPR009057Homeodomain-like
SMARTSM007178.7E-1194144IPR001005SANT/Myb domain
PfamPF002493.6E-1395142IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2296149IPR009057Homeodomain-like
CDDcd001674.91E-998142No hitNo description
PROSITE profilePS5129425.339143197IPR017930Myb domain
SMARTSM007179.6E-16147195IPR001005SANT/Myb domain
PfamPF002497.4E-15148191IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-25150198IPR009057Homeodomain-like
CDDcd001673.52E-11150190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MLQHSHTSPY IYNTHSGPFP PYLPHLHTAC LEIIDRPHAH SLACTTTRSP QLRAPASARA  60
RSSSRQDQIR TAMRKPEGPA AANSCNAGAA AKLRKGLWSP EEDEKLVAYM LRSGQGSWSD  120
VARNAGLQRC GKSCRLRWIN YLRPDLKRGA FSPQEEELIV SLHAILGNRW SQIAARLPGR  180
TDNEIKNFWN STIKKRLKNC SSASSPAATD CPSPEPTSKV VAGIDISGAA SCPDLAGLDH  240
HQDGGHHHAM VTTGGLWMVD SSSSTSSSTS PMQGRPPSAM AAAVARSYGG LLPLPDQLRG  300
GMAANASPAG FFHGQAAPFK HQVASFHGGY YVSAPHHHGM ISTMDGGGGC FMRGEGLFGV  360
PPLLEAMSAQ DQDHAQTTLM ASSGGNNNPK NNSSNNTTET TATTTTTVSN NESNITDNTT  420
TKDNINTMSL VNSSSSNVAA VYWEGAHQQY MSRNVMHGEW DLEELMKDVS SLPFLDFQVE  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28931975108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00599PBMTransfer from AT5G12870Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0750940.0KT075094.1 Panicum virgatum secondary wall-associated MYB domain-containing protein (MYB46A) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808414.10.0myb-related protein 330-like
TrEMBLA0A2S3HE810.0A0A2S3HE81_9POAL; Uncharacterized protein
STRINGPavir.Ca02370.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98213545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.12e-65myb domain protein 46