PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C03968.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

HB-other

Protein Properties

Length: 1173aa MW: 128298 Da PI: 8.5857

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C03968.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18.2	4.4e-06	74	130	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ +++lF+ + ++ ++e +e++ +g+t +qV+ +F +R + +k Pahal.C03968.1 74 KRPRDLLNPKAVKCMQSLFALKDTIGKKETREISLLCGVTVTQVREFFTSQRSRVRK 130 799**************************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	8.811	71	131	IPR001356	Homeobox domain
SMART	SM00389	0.0058	73	135	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.84E-6	73	133	IPR009057	Homeodomain-like
CDD	cd00086	0.00153	74	130	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.0E-4	74	130	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1173 aa Download sequence Send to blast
MELVPFKPAA GALVEAGSGA GAGSIPAMVA AQQQMLHEQA DQLQRLVVAQ CRLTGVNPLA 60 QEMAAGALSI KIGKRPRDLL NPKAVKCMQS LFALKDTIGK KETREISLLC GVTVTQVREF 120 FTSQRSRVRK FVQLSREKAL RVEASKEHDN ACSISTEQIP VDIEAHAEVI EPLRTLEPVV 180 PQSSSQPMGV PQVSSQPMGL PQGLLQPMEV FQNSLQQATA QQNFAAPVMP SGTMGVQPTD 240 AKISSDSAQK EIKQEEVHPG VESEDKKFLE SIFALMRKEE TFSGQVKLLE WILQINNATV 300 LSWFVTMGGL TIMSTWLSLA AIEEQTSVIL VIFKVLLHLP LHKALPAHMS VVLQTINRLR 360 FYRTQDISSR ARNLLSRLSK VLVRSQALKK PQKELICKQR ISEILRDESW KSEVDITEEI 420 LALTDGANES SKPEPRKTPM LLTAAADETN KRSATQTKSK QKRKVLLVEP PNKKAAVKNV 480 NSVRNISTNN SRPLSADDIQ KAKMRAMFMQ EKYGKVDTSK ASDKPQALET PKTSGLVYST 540 VLPVPRNPPR STAQLVDTSP STSNQSTVAQ PDKPEISGGL KLNIGSQKNV IEKLDSRRVP 600 WRIPPAVWID PSWSVSAGDN SKELEVQTQR NRRERETFYA SQKDIPLNPK DPWDMEMDFD 660 DSLTPEIPID QAPDADTMET DSVGAALNAV APVEDKQIGS TSSTSVSVAN GTNGEDPEPD 720 LELLTVLLKN PQLVFALTSN KGENVTSEQT VALLDTLKRT GLGLSELVNT LGNGAGTPKE 780 PEPEPIPASL PSPTPSDQTT RAAWGSEHPT QARAPNLQQP QLSNRGNTPP IANTVQQSFS 840 NVISSLPSQP YAPVSVLPAQ IQANVPSLPQ LAVSVNPPIQ HVSPANNHLN RASVHQHGQQ 900 YALASDPVAI SLHQQSAVNK SSHGLQSIPN HSVVHSSMPE PDASYTTLPW QSNAAHVTNT 960 GRNATVEPWA ARTTNSYNTA SASTVPYGNQ NAYGDQRTHS AHNPYGSAAV SSQSVLPGHG 1020 LDRNGYSRPM EYQTMARDGH QRHSRSPDPS AGRNYVGTQG YNQQPLTHWS AGQGQQSYNP 1080 EPSRQWSSAQ QSYTPAEPST RQWSSAHQSY APAEPSRPWS SERQSYNVEP SRPWSSGQQG 1140 QNPEASRQWN LGKQDPYNPS DGRRSYDHHW RR*

Sequence ? help Back to Top

Protein Sequence Length: 1173 aa Download sequence Send to blast

MELVPFKPAA GALVEAGSGA GAGSIPAMVA AQQQMLHEQA DQLQRLVVAQ CRLTGVNPLA  60
QEMAAGALSI KIGKRPRDLL NPKAVKCMQS LFALKDTIGK KETREISLLC GVTVTQVREF  120
FTSQRSRVRK FVQLSREKAL RVEASKEHDN ACSISTEQIP VDIEAHAEVI EPLRTLEPVV  180
PQSSSQPMGV PQVSSQPMGL PQGLLQPMEV FQNSLQQATA QQNFAAPVMP SGTMGVQPTD  240
AKISSDSAQK EIKQEEVHPG VESEDKKFLE SIFALMRKEE TFSGQVKLLE WILQINNATV  300
LSWFVTMGGL TIMSTWLSLA AIEEQTSVIL VIFKVLLHLP LHKALPAHMS VVLQTINRLR  360
FYRTQDISSR ARNLLSRLSK VLVRSQALKK PQKELICKQR ISEILRDESW KSEVDITEEI  420
LALTDGANES SKPEPRKTPM LLTAAADETN KRSATQTKSK QKRKVLLVEP PNKKAAVKNV  480
NSVRNISTNN SRPLSADDIQ KAKMRAMFMQ EKYGKVDTSK ASDKPQALET PKTSGLVYST  540
VLPVPRNPPR STAQLVDTSP STSNQSTVAQ PDKPEISGGL KLNIGSQKNV IEKLDSRRVP  600
WRIPPAVWID PSWSVSAGDN SKELEVQTQR NRRERETFYA SQKDIPLNPK DPWDMEMDFD  660
DSLTPEIPID QAPDADTMET DSVGAALNAV APVEDKQIGS TSSTSVSVAN GTNGEDPEPD  720
LELLTVLLKN PQLVFALTSN KGENVTSEQT VALLDTLKRT GLGLSELVNT LGNGAGTPKE  780
PEPEPIPASL PSPTPSDQTT RAAWGSEHPT QARAPNLQQP QLSNRGNTPP IANTVQQSFS  840
NVISSLPSQP YAPVSVLPAQ IQANVPSLPQ LAVSVNPPIQ HVSPANNHLN RASVHQHGQQ  900
YALASDPVAI SLHQQSAVNK SSHGLQSIPN HSVVHSSMPE PDASYTTLPW QSNAAHVTNT  960
GRNATVEPWA ARTTNSYNTA SASTVPYGNQ NAYGDQRTHS AHNPYGSAAV SSQSVLPGHG  1020
LDRNGYSRPM EYQTMARDGH QRHSRSPDPS AGRNYVGTQG YNQQPLTHWS AGQGQQSYNP  1080
EPSRQWSSAQ QSYTPAEPST RQWSSAHQSY APAEPSRPWS SERQSYNVEP SRPWSSGQQG  1140
QNPEASRQWN LGKQDPYNPS DGRRSYDHHW RR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	754	759	DTLKRT

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815839.1	0.0	homeobox protein LUMINIDEPENDENS isoform X1
Swissprot	Q38796	1e-116	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A2S3HNA2	0.0	A0A2S3HNA2_9POAL; Uncharacterized protein
STRING	Pavir.Ea03823.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8043	30	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-100	HB-other family protein

Link Out ? help Back to Top
Phytozome	Pahal.C03968.1

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]