PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C03966.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 161aa    MW: 17521.8 Da    PI: 11.6624
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C03966.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP53.68.6e-174712638105
             TCP  38 eLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...............kaaksaa.kskksqksaa 105
                     eLG+++d++tieWLlqqa+pai ++tgt++ +a+ +   s + s   ++++               ++ ++++  ++ +++  +
  Pahal.C03966.1  47 ELGHKSDGETIEWLLQQAEPAILAATGTGTMPANYS---SLNISIR-PGEPpppltlpaprrsrrsRSTRTTTrRPRAARHARH 126
                     9***************************88888444...2222222.1111344444444443322111111112222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.7E-144793IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MRRHSPVEEV ECRPKLWPGY PISNENPNTP RVPAGCKKVP SEATPHELGH KSDGETIEWL  60
LQQAEPAILA ATGTGTMPAN YSSLNISIRP GEPPPPLTLP APRRSRRSRS TRTTTRRPRA  120
ARHARHDGLP PQPPPATATG PQRRRRQHAE ALQGGPFQGG *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269512e-79KJ726951.1 Zea mays clone pUT3645 TCP transcription factor (TCP12) mRNA, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.19e-22TCP family protein