PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C03966.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | TCP | ||||||||
Protein Properties | Length: 161aa MW: 17521.8 Da PI: 11.6624 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 53.6 | 8.6e-17 | 47 | 126 | 38 | 105 |
TCP 38 eLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...............kaaksaa.kskksqksaa 105 eLG+++d++tieWLlqqa+pai ++tgt++ +a+ + s + s ++++ ++ ++++ ++ +++ + Pahal.C03966.1 47 ELGHKSDGETIEWLLQQAEPAILAATGTGTMPANYS---SLNISIR-PGEPpppltlpaprrsrrsRSTRTTTrRPRAARHARH 126 9***************************88888444...2222222.1111344444444443322111111112222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.7E-14 | 47 | 93 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MRRHSPVEEV ECRPKLWPGY PISNENPNTP RVPAGCKKVP SEATPHELGH KSDGETIEWL 60 LQQAEPAILA ATGTGTMPAN YSSLNISIRP GEPPPPLTLP APRRSRRSRS TRTTTRRPRA 120 ARHARHDGLP PQPPPATATG PQRRRRQHAE ALQGGPFQGG * |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726951 | 2e-79 | KJ726951.1 Zea mays clone pUT3645 TCP transcription factor (TCP12) mRNA, partial cds. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4934 | 26 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72010.1 | 9e-22 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C03966.1 |