PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C03926.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ARF | ||||||||
Protein Properties | Length: 811aa MW: 90786.7 Da PI: 6.4734 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.2 | 3.1e-23 | 129 | 230 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +++a+e+ +++++ ++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F + + Pahal.C03926.1 129 FCKTLTASDTSTHGGFSVLRRHADEClplldmtQSPPT--QELVAKDLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGE 219 99*****************************7555544..58************************************************..449 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+v+v+r+ Pahal.C03926.1 220 NGELRVGVRRA 230 999*****996 PP | |||||||
2 | Auxin_resp | 112.7 | 3.6e-37 | 255 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++tks+F+v+Y+Pr+s+seF++++++++++lk+++s+GmRf+m+fe+e+++e+r++Gt+vg ++ldp Wp+S Wr Lk Pahal.C03926.1 255 AWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESLKHNYSIGMRFRMRFEGEEAPEQRFTGTIVGCENLDP-LWPDSSWRYLK 336 89*********************************************************************.9*******996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.0E-40 | 121 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.19E-39 | 123 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.66E-21 | 127 | 229 | No hit | No description |
PROSITE profile | PS50863 | 11.928 | 129 | 231 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.7E-23 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.0E-21 | 129 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-33 | 255 | 336 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.4E-13 | 681 | 783 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 7.85E-13 | 692 | 775 | No hit | No description |
PROSITE profile | PS51745 | 24.728 | 698 | 791 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 811 aa Download sequence Send to blast |
MPPAAMAPPP PPQASSNSGD PLYPELWRAC AGPLVTVPRP GDLVFYFPQG HIEQVEASMN 60 QVAGNQMRLY DLPSKLLCRV LNVELKAETE TDEVYAQIML MPEPEQNEAA AEKASSGSPA 120 TPRPAVRSFC KTLTASDTST HGGFSVLRRH ADECLPLLDM TQSPPTQELV AKDLHGMEWR 180 FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG DAFIFLRGEN GELRVGVRRA MRQLSNVPSS 240 VISSQSMHLG VLATAWHAIN TKSMFTVYYK PRTSPSEFII PYDQYMESLK HNYSIGMRFR 300 MRFEGEEAPE QRFTGTIVGC ENLDPLWPDS SWRYLKVRWD EPSTIPRPDR VSPWKIEPAS 360 SPPVNPVPLS SRVKRPRQAP PPSPESSVLT KEGATKIDIS SAQTQQHQNS VLQGQEQMTL 420 RNNMTESTDS DATVQKPMMW SPSPNGKTHT SFQQRPSMDN WMPLGRRETD FKDTRSAFKD 480 ARTSSQSFGD TQGFFMPTFD ENHHRLSFNN QFQDQGSAHR FADPYFYMPQ QPSLTVESST 540 RTQTANNELR FWSDQNTVYG NTSDQQQGFR FAQNSSSWLN QPFTQAEQPR VVRPHATVAP 600 FDLEKAREGS GFKIFGFKVD TASASPIQLS SPMSAMREHV VQTQPSASGS ELQPVQTECL 660 PEGSVSTAGT ATENEKSIQQ APQSSKDIQS KSQGASTRSC TKVHKQGVAL GRSVDLSKFS 720 DYDELKAELD KMFEFEGELV SANKNWQIVY TDNEGDMMLV GDDPWDEFCS IVRKIYIYTK 780 EEVQKMNSKS SAPRKEEPLA SGELCVATNE * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-166 | 20 | 361 | 17 | 357 | Auxin response factor 1 |
4ldw_A | 1e-166 | 20 | 361 | 17 | 357 | Auxin response factor 1 |
4ldw_B | 1e-166 | 20 | 361 | 17 | 357 | Auxin response factor 1 |
4ldx_A | 1e-166 | 20 | 361 | 17 | 357 | Auxin response factor 1 |
4ldx_B | 1e-166 | 20 | 361 | 17 | 357 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815802.1 | 0.0 | auxin response factor 4-like | ||||
Swissprot | Q5JK20 | 0.0 | ARFD_ORYSJ; Auxin response factor 4 | ||||
TrEMBL | A0A2S3HNE1 | 0.0 | A0A2S3HNE1_9POAL; Auxin response factor | ||||
STRING | Pavir.Ea03860.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1178 | 36 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.4 | 0.0 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C03926.1 |
Publications ? help Back to Top | |||
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