PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C03738.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 350aa    MW: 36084.4 Da    PI: 6.5995
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C03738.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.22.4e-203378147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+WT+eEd+ll +av+++G+++W+ I+++++ gR++k+c++rw + 
   Pahal.C03738.1 33 KGSWTPEEDDLLRRAVTRHGPRNWSVISAEIP-GRSGKSCRLRWCNQ 78
                     799*****************************.***********985 PP
2Myb_DNA-binding60.24.3e-1985129147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r ++T+eEd l+v a++q+G++ W+tIar++  gRt++++k++w++ 
   Pahal.C03738.1  85 RRAFTPEEDALIVAAHAQYGNK-WATIARMLH-GRTDNSVKNHWNST 129
                      678*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.2312883IPR017930Myb domain
SuperFamilySSF466892.91E-3031126IPR009057Homeodomain-like
SMARTSM007178.1E-173281IPR001005SANT/Myb domain
PfamPF002492.0E-193378IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-243486IPR009057Homeodomain-like
CDDcd001674.53E-163577No hitNo description
SMARTSM007175.3E-1684132IPR001005SANT/Myb domain
PfamPF002499.6E-1685129IPR001005SANT/Myb domain
PROSITE profilePS5129420.62585134IPR017930Myb domain
CDDcd001671.50E-1287130No hitNo description
Gene3DG3DSA:1.10.10.604.8E-2387132IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MVVLPGGAAG GADGGGAPEG SRGGGLGGAA RVKGSWTPEE DDLLRRAVTR HGPRNWSVIS  60
AEIPGRSGKS CRLRWCNQLS PGVERRAFTP EEDALIVAAH AQYGNKWATI ARMLHGRTDN  120
SVKNHWNSTL RRHRRAAAAA ANGGALPLRP LAAGPPPVPL RHLLADPKES SPAPAPASVV  180
PFQPLDLKRE DDGDEEEEDE DDEDGSSEDS VLMAPPKKRP CLGVGAGAGA GHTHPSLCAV  240
KQPEHTKPQL PTPAAEPVTS LTLSLPGGGG GTVSENPELR GAAAAAVSSV DGAAKTRAKL  300
EQDCPWLLPV MRQMICEEVQ RQLQGASVAC SLVASPAGRA SAGAADGQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-35321323103C-Myb DNA-Binding Domain
1msf_C2e-35321323103C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9698541e-121EU969854.1 Zea mays clone 336503 mRNA sequence.
GenBankKJ7276591e-121KJ727659.1 Zea mays clone pUT5586 MYB transcription factor (MYB119) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809452.10.0transcription factor MYB77-like
TrEMBLA0A2S3HDC10.0A0A2S3HDC1_9POAL; Uncharacterized protein
STRINGSi024344m1e-123(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-51myb domain protein 73