PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.C03622.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 261aa MW: 28186 Da PI: 4.1218 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.3e-20 | 12 | 63 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +gy+GVr++ +g+WvAeIr+p + r r +lg+f tae+Aa+a+++a+++++ge Pahal.C03622.3 12 CGYRGVRQRT-WGKWVAEIREP---N-RvNRLWLGTFPTAEDAARAYDEAARAMYGE 63 79*****999.**********8...2.489************************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.88E-31 | 12 | 70 | No hit | No description |
Pfam | PF00847 | 6.2E-14 | 12 | 63 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-22 | 13 | 71 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.1E-34 | 13 | 76 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.721 | 13 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-11 | 14 | 25 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-32 | 14 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-11 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MKGKGGPENT QCGYRGVRQR TWGKWVAEIR EPNRVNRLWL GTFPTAEDAA RAYDEAARAM 60 YGEVARTNFP RQSAATSSQV APAAASTQVA AVVDSLLPST SCESTTTSNH SDIASTALKP 120 EVADISSSLK VEYPMEAGSH RSEMISGSWV QHEDSHPSST QASTPNVADK EVFEPLEPIA 180 NIPEGEDDGF DIEEMLRMME ADPQNKGGVD ASMGQPFYLD GLDSSVLESM LQSEPEPYSM 240 SEETDMFLAG FESPGFFEGL * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-17 | 14 | 70 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810001.1 | 0.0 | dehydration-responsive element-binding protein 2B-like isoform X1 | ||||
Refseq | XP_025810002.1 | 0.0 | dehydration-responsive element-binding protein 2B-like isoform X2 | ||||
Refseq | XP_025810003.1 | 0.0 | dehydration-responsive element-binding protein 2B-like isoform X3 | ||||
Swissprot | Q5W6R4 | 7e-59 | DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B | ||||
TrEMBL | A0A2S3HDG0 | 0.0 | A0A2S3HDG0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Cb01298.1.p | 1e-152 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G05410.2 | 1e-24 | DRE-binding protein 2A |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.C03622.3 |
Publications ? help Back to Top | |||
---|---|---|---|
|