PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C03567.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 260aa MW: 30235.4 Da PI: 7.8418 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 67.8 | 2.8e-21 | 12 | 100 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 f+ +Y+ + GF+vrk +++k+k +g++ + ++vC +eg+r+++k++ + ++ +raetrt+C+ ++ + +++ +++++v++l leHnH l+ Pahal.C03567.1 12 FWISYGGQKGFEVRKMYTNKRKSDGKVRSCRYVCANEGHRKKDKRD-HLTKCPRAETRTDCQVRMGLIMDReKETYKVADLILEHNHMLQ 100 999****************************************999.999***************9888777***************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-16 | 12 | 99 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MEFNTIDEAW MFWISYGGQK GFEVRKMYTN KRKSDGKVRS CRYVCANEGH RKKDKRDHLT 60 KCPRAETRTD CQVRMGLIMD REKETYKVAD LILEHNHMLQ LPQTSHLMVS QRKILELQGF 120 EIETADDAGI GPKAAHELAC VQVGGSSNLS YTLRDHKNYL RAKRQREMAY DQAGSMLMYF 180 QDKITENPSF QYALQMDIEE QIANIFWVDA KMLTDYTYFG DVVSFDTTFG TNKESRPFGV 240 FVGFNQFRET VVFWCRSLI* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012618 | 0.0 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025876513.1 | 1e-170 | protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
TrEMBL | A0A2S3HDK1 | 0.0 | A0A2S3HDK1_9POAL; Uncharacterized protein | ||||
STRING | OS10T0571900-00 | 1e-168 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 8e-42 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C03567.1 |