PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C03546.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C3H

Protein Properties

Length: 669aa MW: 74152.6 Da PI: 8.8854

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C03546.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.3	2.7e-08	121	144	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt++C+f+ + G+C++G +C+++H+ Pahal.C03546.1 121 KTVPCKFYVQ-GQCHHGLNCRYIHD 144 9*******.***********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	1.1E-5	116	144	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.72E-7	119	144	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.2E-5	119	145	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.629	119	146	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.4E-6	121	144	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence Send to blast
MDRSVCKEWP RSDAIEGSPE SPWNQSHRSI IRSRSRSPER RWRDWVSEEP VAADRWGSGA 60 VPIPQRDYHF TLQGNDIGEG ILYRGAGWPY SHGVHSHEIR ESSRARGYLD SSNGRRPKQR 120 KTVPCKFYVQ GQCHHGLNCR YIHDSALETE MGLRVPVAAP VHTNAHNWYP HHSAPQNQVE 180 LCTPVAVSTS AHVLSRCGRG HQNSQGIFRA IAKDEHNGLQ LNYAQRSQNY VFPSEDIVSQ 240 QPQLLIPGRT SENGIYIDKG QNSHETNGIV GVQIGMQAAN LATQKNLINQ EQQIAWKNSG 300 QIEQSQEAVH PIHGVPSHLH ATHLPNATAS WPWNSRMHQS NFLVHPKWPG EFVVPQAGVY 360 VPALSLQGQS FSQKAYAIPV PDASSDNGHS FNVNGQIPRN LGAAVHAGGS KEISGIPKNG 420 QDSDAQSMQN TKNFQPVGVN VQTQRQTLQE VSAVPYSRSV DRVGGSIYHN TAISEEDHNI 480 NPDLAPSIGN ALLTASPIGK RFSQRNRDPR LVSKSSAAPP SVPPVQEEEA ISVPSAAPPS 540 VPPVQHEAAI SVPSGKIHTS NIATRDDTTH PVVSLSVEVT EHAEARSNFK IALTNFVREQ 600 LRKTWRSGHL TKELYKVIVR KVVKKVIHNE ENIPDSSEKV NQYLRDFRGI INKFIMDDFN 660 HRNITFLE*

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence Send to blast

MDRSVCKEWP RSDAIEGSPE SPWNQSHRSI IRSRSRSPER RWRDWVSEEP VAADRWGSGA  60
VPIPQRDYHF TLQGNDIGEG ILYRGAGWPY SHGVHSHEIR ESSRARGYLD SSNGRRPKQR  120
KTVPCKFYVQ GQCHHGLNCR YIHDSALETE MGLRVPVAAP VHTNAHNWYP HHSAPQNQVE  180
LCTPVAVSTS AHVLSRCGRG HQNSQGIFRA IAKDEHNGLQ LNYAQRSQNY VFPSEDIVSQ  240
QPQLLIPGRT SENGIYIDKG QNSHETNGIV GVQIGMQAAN LATQKNLINQ EQQIAWKNSG  300
QIEQSQEAVH PIHGVPSHLH ATHLPNATAS WPWNSRMHQS NFLVHPKWPG EFVVPQAGVY  360
VPALSLQGQS FSQKAYAIPV PDASSDNGHS FNVNGQIPRN LGAAVHAGGS KEISGIPKNG  420
QDSDAQSMQN TKNFQPVGVN VQTQRQTLQE VSAVPYSRSV DRVGGSIYHN TAISEEDHNI  480
NPDLAPSIGN ALLTASPIGK RFSQRNRDPR LVSKSSAAPP SVPPVQEEEA ISVPSAAPPS  540
VPPVQHEAAI SVPSGKIHTS NIATRDDTTH PVVSLSVEVT EHAEARSNFK IALTNFVREQ  600
LRKTWRSGHL TKELYKVIVR KVVKKVIHNE ENIPDSSEKV NQYLRDFRGI INKFIMDDFN  660
HRNITFLE*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809616.1	0.0	zinc finger CCCH domain-containing protein 55-like isoform X2
TrEMBL	A0A2S3HDL0	0.0	A0A2S3HDL0_9POAL; Uncharacterized protein
STRING	Pavir.J07100.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7766	34	43

Link Out ? help Back to Top
Phytozome	Pahal.C03546.1