PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C03418.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 485aa MW: 56035.9 Da PI: 7.9846

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C03418.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.8	1.8e-18	19	100	9	90
FAR1 9 evGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 e+ F+vrk++++ sk +g++t+ +fvCs+eg+r++ ++ + ++ rae+rt+Cka++++++++ +g++e+t+++leHnH l+ Pahal.C03418.1 19 EACFDVRKRYTNLSKYDGKVTSCRFVCSNEGHRRKGLTN-HVTKYFRAEKRTDCKARMTLTLDRgEGNYEITDVVLEHNHLLQ 100 678******************************9999.889999**************9*************885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.8E-14	19	99	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.7E-7	222	271	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.458	418	471	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.9E-6	443	468	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.2E-5	446	473	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
SLSDNKIPQV GLRFKISDEA CFDVRKRYTN LSKYDGKVTS CRFVCSNEGH RRKGLTNHVT 60 KYFRAEKRTD CKARMTLTLD RGEGNYEITD VVLEHNHLLQ LPETRHLMAS QRKISELQAF 120 EIETVDDSGI RPKGAHELAS RQVGGPLNLG YTFCDRKNYL QSKRQRELAF GQAGSMLKYF 180 HDQIAENPSF QYALQLDCEE HITNIFWADA KMILDYAHFG DVVTFDTTFG TNKEYRPFGV 240 FLGLNQFWET TIFGAALLFN ETEASFTWLA CMYGFEDKAA FQEAFDIMRC KVHKKTWLDS 300 IYKVKEKWAE CYVRDVFSLG VRNTQLSESF NNALKNHLKS DFDIVRFLKN FERTVQEKRR 360 KELDEFESRK KMPRRQMSTP MLVQASQVYT LVIFEAFQSE YERSMAACAR VFDGDNKYAI 420 ALGSLRDNLS FEDERIVIGD PLNQKASCSC GMFNRTGILC AHGLKVLDLM NIKILPTHYP 480 KEMD*

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

SLSDNKIPQV GLRFKISDEA CFDVRKRYTN LSKYDGKVTS CRFVCSNEGH RRKGLTNHVT  60
KYFRAEKRTD CKARMTLTLD RGEGNYEITD VVLEHNHLLQ LPETRHLMAS QRKISELQAF  120
EIETVDDSGI RPKGAHELAS RQVGGPLNLG YTFCDRKNYL QSKRQRELAF GQAGSMLKYF  180
HDQIAENPSF QYALQLDCEE HITNIFWADA KMILDYAHFG DVVTFDTTFG TNKEYRPFGV  240
FLGLNQFWET TIFGAALLFN ETEASFTWLA CMYGFEDKAA FQEAFDIMRC KVHKKTWLDS  300
IYKVKEKWAE CYVRDVFSLG VRNTQLSESF NNALKNHLKS DFDIVRFLKN FERTVQEKRR  360
KELDEFESRK KMPRRQMSTP MLVQASQVYT LVIFEAFQSE YERSMAACAR VFDGDNKYAI  420
ALGSLRDNLS FEDERIVIGD PLNQKASCSC GMFNRTGILC AHGLKVLDLM NIKILPTHYP  480
KEMD*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020401467.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020408139.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_025822576.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	B9EY27	0.0	B9EY27_ORYSJ; Uncharacterized protein
STRING	Sb09g006170.1	1e-174	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-61	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pahal.C03418.1