PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02998.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 273aa    MW: 27580.8 Da    PI: 7.4989
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02998.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601383.3e-4340137198
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC++dCv+apyfp ++p+kf  vh++FGasnv+k+l++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq++l+q+++ela
  Pahal.C02998.1  40 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKILNELHPYQREDAVNSLAYEADMRLRDPVYGCVGVISILQHRLRQVQQELA 134
                     7*********************************************************************************************9 PP

          DUF260  96 llk 98 
                     ++ 
  Pahal.C02998.1 135 RAS 137
                     876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.83339140IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-4340136IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MAASSASSVP PASAGSVITV ASPSTGGSIS GGAGAGTGSP CAACKFLRRK CQPDCVFAPY  60
FPPDNPQKFV HVHRVFGASN VTKILNELHP YQREDAVNSL AYEADMRLRD PVYGCVGVIS  120
ILQHRLRQVQ QELARASYEL SKYQAAAEAA AASVAVGSNG ATAAGMPDFV GNPVPNCTQN  180
FINGNSTAPA IGGTGFAHPD HFASVQMLAR SYDGEAAAAR LGMNGAGGVY GFGYSSAMGA  240
GHGVVSGLGQ IGSGQFLKPG TAGGDEQPTA AQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-53361437114LOB family transfactor Ramosa2.1
5ly0_B3e-53361437114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7955601e-126AY795560.1 Triticum aestivum AS2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808846.10.0LOB domain-containing protein 6-like
SwissprotQ32SG31e-110LBD6_MAIZE; LOB domain-containing protein 6
TrEMBLA0A2S3HCF20.0A0A2S3HCF2_9POAL; Uncharacterized protein
STRINGPavir.J03307.1.p1e-134(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22673895
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.43e-51LBD family protein