PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02978.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 443aa    MW: 47461.5 Da    PI: 7.5643
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02978.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.74.8e-49481732128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                     +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+++  + kew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ +  ++
  Pahal.C02978.1  48 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELIAFLDLYRFDPWELPAMAVMGGKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRMIRGEN 141
                     79***************************.89***************7767789***************************************** PP

             NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++ +glkktLvfy+g+apkg++++W+m+eyrl
  Pahal.C02978.1 142 NRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 173
                     ******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.27E-5646197IPR003441NAC domain
PROSITE profilePS5100554.72347197IPR003441NAC domain
PfamPF023651.8E-2449173IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MSRDLEDGQG AVDSVVAAAA GEGERGSEAP TAAGGGGGGD AHDNDVVMPG FRFHPTEEEL  60
IEFYLRRKVE GKRFNVELIA FLDLYRFDPW ELPAMAVMGG KEWFFYVPRD RKYRNGDRPN  120
RVTASGYWKA TGADRMIRGE NNRPIGLKKT LVFYSGKAPK GVRSSWIMNE YRLPPPATDA  180
DPLIPKSEIS LCRVYKRSGI DDGHGQSSSS TQASSGRGVS SRTSVPPTGR HGSSPSSTPL  240
SPTQLSPTQQ LSSFHLLQGE CSSASPPAPI MDQVVTVHTA PPLLPPPRPC TYAPAATTIR  300
STAAVAPQRA QGAAVIPSST YSSLLNMAAG AAPMAGSSRP IDELMSTPRL VSPSQAYANL  360
SAVTGSHFLP LMPAPPPPMP QMTPLGTLPM VPLPPSVTDK LSWDWNPVPD TTAQDYNASG  420
FNRCCFFQHD WGEELKGVDN VR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-544919819166NO APICAL MERISTEM PROTEIN
1ut4_B7e-544919819166NO APICAL MERISTEM PROTEIN
1ut7_A7e-544919819166NO APICAL MERISTEM PROTEIN
1ut7_B7e-544919819166NO APICAL MERISTEM PROTEIN
4dul_A7e-544919819166NAC domain-containing protein 19
4dul_B7e-544919819166NAC domain-containing protein 19
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0604780.0BT060478.1 Zea mays full-length cDNA clone ZM_BFb0004F04 mRNA, complete cds.
GenBankHQ8587620.0HQ858762.1 Zea mays clone UT1609 NAC transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805291.10.0NAC domain-containing protein 35-like
TrEMBLA0A2T7EDP60.0A0A2T7EDP6_9POAL; Uncharacterized protein
STRINGSi022103m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28263787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.22e-92NAC domain containing protein 35