PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02913.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 261aa    MW: 27746.5 Da    PI: 9.0121
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02913.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.47.1e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lv +++ +G g+W++ ++  g+ R++k+c++rw +yl
   Pahal.C02913.1 14 KGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding57.33.6e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T eEde+++++++ lG++ W++Ia  ++ gRt++++k++w+++
   Pahal.C02913.1  67 RGNFTDEEDEIIIRLHAILGNK-WSLIAGQLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.186961IPR017930Myb domain
SuperFamilySSF466891.51E-2913108IPR009057Homeodomain-like
SMARTSM007177.6E-141363IPR001005SANT/Myb domain
PfamPF002491.5E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-231568IPR009057Homeodomain-like
CDDcd001671.04E-111661No hitNo description
PROSITE profilePS5129428.54362116IPR017930Myb domain
SMARTSM007173.3E-1766114IPR001005SANT/Myb domain
PfamPF002496.2E-1667111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2869116IPR009057Homeodomain-like
CDDcd001671.80E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDERLVAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWMNY  60
LRPDLKRGNF TDEEDEIIIR LHAILGNKWS LIAGQLPGRT DNEIKNYWNT HIKRKLLARG  120
IDPQTHRPLG SAEAGAPGVV AHRAAALLHA TTAPALAAAA ARTLAAKPTP AASSSDDGAR  180
STSTSTSSGG GASTGEPRCP DLNLDLSVGP PPAADTPPSQ PVCLCYRLGL RAGEACGCQA  240
DKPGAGGFRY FRPLEQGQYI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-30141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF3725210.0EF372521.1 Saccharum officinarum MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807836.10.0myb-related protein 308-like
SwissprotP813931e-94MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A2S3HBT90.0A0A2S3HBT9_9POAL; Uncharacterized protein
STRINGORUFI05G18670.11e-129(Oryza rufipogon)
STRINGOS05T0429900-011e-129(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.16e-87myb domain protein 6
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]