PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C02822.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 189aa MW: 20682.9 Da PI: 9.4111 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.2 | 1e-14 | 120 | 164 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++++ +++G g+W+ I+r k+Rt+ q+ s+ qky Pahal.C02822.1 120 PWTEEEHRLFLEGLEKYGRGDWRNISRWSVKTRTPTQVASHAQKY 164 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0039 | 23 | 75 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.73E-11 | 23 | 74 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.1E-6 | 25 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.03E-4 | 26 | 73 | No hit | No description |
PROSITE profile | PS50090 | 7.05 | 26 | 73 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 19.637 | 113 | 169 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.51E-18 | 115 | 169 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.2E-11 | 117 | 167 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 3.7E-17 | 117 | 168 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.5E-11 | 119 | 163 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-11 | 120 | 164 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.03E-11 | 120 | 165 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MAFYYGVSGQ SSSAAAAWAA PPSSRPWSKA EDKVFEGALV TFPEHVPNRW TLVASRLPGR 60 TAQEAWDHYQ ALLTDVDLIE RGMVEAPDSW DEDAAAGGGR AGAGRGRGAG GGEERRRGVP 120 WTEEEHRLFL EGLEKYGRGD WRNISRWSVK TRTPTQVASH AQKYFIRQAS AGSRGDSKRK 180 SIHDITTP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU971405 | 1e-171 | EU971405.1 Zea mays clone 363908 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808699.1 | 1e-134 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 2e-51 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2S3HBP1 | 1e-133 | A0A2S3HBP1_9POAL; Uncharacterized protein | ||||
STRING | Si023363m | 4e-96 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2895 | 36 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 7e-42 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C02822.1 |
Publications ? help Back to Top | |||
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