PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02785.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 311aa    MW: 33513.6 Da    PI: 6.7922
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02785.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.8e-073680244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     g+WT eE +l+ +a ++   +   +W+++a+ ++ gR   +++ ++
   Pahal.C02785.1 36 GAWTLEENKLFERALARVDWDapdRWERVAALLP-GRMVSDVVAHY 80
                     79****************99999***********.********999 PP
2Myb_DNA-binding45.71.5e-14153197347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G g+W+ I+r + + Rt+ q+ s+ qky
   Pahal.C02785.1 153 PWTEEEHKLFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKY 197
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.3E-53486IPR001005SANT/Myb domain
PfamPF002498.4E-63680IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-103691IPR009057Homeodomain-like
PROSITE profilePS500906.1443684IPR017877Myb-like domain
CDDcd001675.70E-63780No hitNo description
PROSITE profilePS5129417.568146202IPR017930Myb domain
SuperFamilySSF466891.42E-17148202IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-17149200IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.1E-12150196IPR009057Homeodomain-like
SMARTSM007175.8E-13150200IPR001005SANT/Myb domain
PfamPF002497.2E-12153197IPR001005SANT/Myb domain
CDDcd001672.01E-11153198No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MTESWMDVLP PAPAPPYFAG QAAGRFLPDR RAPGPGAWTL EENKLFERAL ARVDWDAPDR  60
WERVAALLPG RMVSDVVAHY DDLENDVCFI EAGLVPFPHY GGGGGAAQSA AGFTFDWDGG  120
DDAAAALGFK RSCYMAGGKR GRGPDQERKK GVPWTEEEHK LFLMGLKKYG RGDWRNISRN  180
FVTSRTPTQV ASHAQKYFIR LNSGGKDKRR SSIHDITTVN LPDDDGGCGG NPSPSPPSVL  240
TAASTPSSTG GPVISEQFGV LVDSKPAPTH HFMPHPYGSV KLEPGNPRHG GFLDDSVLMQ  300
MQCGQLQPLG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-15381091182RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0542810.0BT054281.1 Zea mays full-length cDNA clone ZM_BFb0211P03 mRNA, complete cds.
GenBankBT0558020.0BT055802.1 Zea mays full-length cDNA clone ZM_BFb0203M07 mRNA, complete cds.
GenBankBT0666720.0BT066672.1 Zea mays full-length cDNA clone ZM_BFb0049J12 mRNA, complete cds.
GenBankHQ8587850.0HQ858785.1 Zea mays clone UT1771 MYB transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804913.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H71e-76DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2S3HBI30.0A0A2S3HBI3_9POAL; Uncharacterized protein
STRINGSi022816m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.12e-71Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]