PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02724.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 610aa    MW: 67025.4 Da    PI: 7.4871
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02724.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-1668113147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g WTteEde l +av    g++Wk+Ia+ ++  Rt+ qc +rwqk+
   Pahal.C02724.1  68 KGGWTTEEDETLQKAVDACNGKNWKKIAESFP-DRTAVQCLHRWQKV 113
                      688*****************************.************96 PP
2Myb_DNA-binding60.24.4e-19120166148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+++++ vk++G + W++Iar ++ gR +kqc++rw+++l
   Pahal.C02724.1 120 KGPWTQEEDDIIINMVKKYGAKKWSLIARSLN-GRIGKQCRERWHNHL 166
                      79******************************.*************97 PP
3Myb_DNA-binding55.41.4e-17172215146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT eE+   +da++++G++ W+ Ia+ ++ gRt++++k++w++
   Pahal.C02724.1 172 KDAWTVEEERVVADAHRLHGNK-WAEIAKLLP-GRTDNSIKNHWNS 215
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.95763114IPR017930Myb domain
SMARTSM007173.6E-1367116IPR001005SANT/Myb domain
PfamPF002493.9E-1468113IPR001005SANT/Myb domain
SuperFamilySSF466898.61E-1569124IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-2270126IPR009057Homeodomain-like
CDDcd001672.11E-1171114No hitNo description
PROSITE profilePS5129431.883115170IPR017930Myb domain
SuperFamilySSF466893.34E-31117213IPR009057Homeodomain-like
SMARTSM007171.2E-17119168IPR001005SANT/Myb domain
CDDcd001675.44E-16122166No hitNo description
PfamPF139213.2E-17123180No hitNo description
Gene3DG3DSA:1.10.10.607.6E-26127169IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-22170221IPR009057Homeodomain-like
SMARTSM007178.6E-16171219IPR001005SANT/Myb domain
PROSITE profilePS5129421.552171221IPR017930Myb domain
CDDcd001676.45E-12174217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MGAMAAVKVE EHEGSAGKWW NLAASSPSTS VSEAGSYGGG ARMSSVVSSP ADSVSGRRRT  60
SGPVRRAKGG WTTEEDETLQ KAVDACNGKN WKKIAESFPD RTAVQCLHRW QKVINPELVK  120
GPWTQEEDDI IINMVKKYGA KKWSLIARSL NGRIGKQCRE RWHNHLDPQI NKDAWTVEEE  180
RVVADAHRLH GNKWAEIAKL LPGRTDNSIK NHWNSSLRKR LGDYNASSPL PVSVHMVRNS  240
LKHEKAKLTN GNHIDLNKEP NINLKHPPEI ADHSEHTTDL RACSLKNIKS CSDFLSLVIP  300
TAQPETHGAL EEGDYSDVAL AAIQGLKMDS IHDKGTEINF VCKERSKIDS LNVEVLKLDH  360
VTDTMGYSGS AKVEGKTVNN VCTLSLPNES NSFGSLCYKI PKLEDVVPSH SPVFSTHHVQ  420
QCWGDGFQSP VGYTTSPGVE DIYQLSAESI LKSAAENFPG TPSILRRRKR ETAAHAEDSN  480
FKIDILNSDS YHTPLGKCTA ESPHSFKTAT FLSLGPPSNE GLSAALGSFD VSPPNRLRSK  540
RMAILRVVEK KHLDFSLDGM DNFDTPDTTK KTSSCTECTN SCTDVSSEHM VGLEILAKDF  600
ARTTKLDVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-68672215159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-68672215159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809062.10.0transcription factor MYB3R-2-like isoform X1
SwissprotQ0JHU70.0MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A2S3HBG50.0A0A2S3HBG5_9POAL; Uncharacterized protein
STRINGSi021484m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.24e-93myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]