PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02514.4
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 331aa    MW: 36317.9 Da    PI: 7.505
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02514.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.24.8e-104581541
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41
                    k+ rr+++NReAAr+sR+RKka++e+Le+   +L + 
  Pahal.C02514.4 45 KALRRLAQNREAARKSRLRKKAYVEQLENSRLKLAQL 81
                    788*************************954444333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.6E-83687No hitNo description
SMARTSM003384.8E-641104IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.9794387IPR004827Basic-leucine zipper domain
PfamPF001703.4E-74583IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.48E-64588No hitNo description
PROSITE patternPS0003604863IPR004827Basic-leucine zipper domain
PfamPF141443.9E-32127203IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAYASPGTDT DLDTDEKNQM LELGQLASLT ASGSGDKSKD KLGQKALRRL AQNREAARKS  60
RLRKKAYVEQ LENSRLKLAQ LEQELQRARQ QGIFIPNPGD KPHSTGENGA LAFDTDYARW  120
QEDHSKQINE LRGALNSHAG DDDLRRIVDS IMAHYGEAFR LKGVAAKADA FHVLSGMWKT  180
PVERCFLWLG EFRPSELLKL LASRLEPLTE QQLASICSLQ QSSQQAEEDL SQGVKALQQS  240
VAEALALGSP CPAGSSGNAA DCSGQMAVAI GKLGTLENFL QEADNLRLQT LQQIQSVLTT  300
RQSARALLAI SDYFSRLRAL SSLWIARPRE *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807053.10.0transcription factor HBP-1b(c1)-like
SwissprotQ415581e-178HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A2S3HAW90.0A0A2S3HAW9_9POAL; Uncharacterized protein
STRINGPavir.J05186.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-142TGACG motif-binding factor 6