PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02443.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 379aa    MW: 40872.7 Da    PI: 7.1246
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02443.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.21.9e-052703071254
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     R +++ +++  L++l+ +      +K + a++L +A+eYI+ L
  Pahal.C02443.1 270 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIRFL 307
                     66788899999*****998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.928258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-11268328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0087269313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.45E-5270312No hitNo description
Gene3DG3DSA:4.10.280.102.4E-9272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MADEWWSSAR TGDGASACST NQDADESAAT SATETDYFRP SFHVGAAAAA STPSFLADPA  60
PHMVNWTQAY MSGGRAAGAE ATTGFNALLQ LHGDDAGRYF LLDQQPDVVD GAEPVAPAAA  120
SRSVHLYADN QYSSYGDVPA APMTKPFSQQ QHFSGLFGSS TRNFSDMPSA LPMTTKPLLL  180
QAWEHKAFKS NKEPVQDTCS SATRRSVPEN SPPAAAKKPR IATPSPLPTF KVCTGRPPAC  240
DAIRRDYITF HLQLSGQLLI SSSAHAIQVR KEKLGDRITA LQQLVSPFGK TDTASVLHEA  300
IEYIRFLHHQ VASLSSPYLR CGRPVQQLQQ QQIKEGCEAK EDLRSRGLCL VPVASTYAVA  360
ASETAPEFWH PTFGGRFR*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0695462e-60BT069546.1 Zea mays full-length cDNA clone ZM_BFb0158B10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806481.10.0transcription factor bHLH123-like isoform X1
TrEMBLA0A2S3HAT20.0A0A2S3HAT2_9POAL; Uncharacterized protein
STRINGPavir.J10443.1.p1e-169(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-39bHLH family protein