PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C02386.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | TCP | ||||||||
Protein Properties | Length: 290aa MW: 30360.2 Da PI: 8.7295 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 94.3 | 2.4e-29 | 55 | 131 | 3 | 83 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +a+++i++l+ ++++++ + + + Pahal.C02386.2 55 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDAAQHEIDKLPPLQFPPQAQ----DLVAHLP 131 78*************************************************************9999822....2222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 29.688 | 56 | 114 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.6E-26 | 56 | 118 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MISGNLTNEE LAARCTKAEV PAAGAGAKQS PAVPSSRHWP PSTESRIVRV SRVFGGKDRH 60 SKVRTVKGLR DRRVRLSVPT AIQLYDLQDR LGLSQPSKVV DWLLDAAQHE IDKLPPLQFP 120 PQAQDLVAHL PPSMVAPFAN GAADRAAAAA ANAATGASAA MADVDKRHCH GGIKGLMGLN 180 NSVGLVNGAM PLAHGLYYTP GEPWANGNAV HDQVGHGTSP QTVGHHSPFS SLLSLAPGPQ 240 LVFYSPEGGG FAMKEAADHQ FPVDNLDHSQ GQLSLSSSAR SFLHPGSQG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-20 | 61 | 115 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 5e-20 | 61 | 115 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00065 | PBM | Transfer from AT5G60970 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956358 | 0.0 | EU956358.1 Zea mays clone 1561243 TCP family transcription factor containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810206.1 | 0.0 | transcription factor PCF8-like | ||||
Refseq | XP_025810207.1 | 0.0 | transcription factor PCF8-like | ||||
Refseq | XP_025810208.1 | 0.0 | transcription factor PCF8-like | ||||
TrEMBL | A0A2S3HAL7 | 0.0 | A0A2S3HAL7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J35609.1.p | 1e-170 | (Panicum virgatum) | ||||
STRING | Si022830m | 1e-170 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 4e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C02386.2 |