PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C02126.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 382aa MW: 39157.5 Da PI: 6.0469

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C02126.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.7	1.3e-05	286	326	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+r+ +++ L++l+P +++ a++L +A Y+k L Pahal.C02126.1 286 ARLRRERVSERLRVLQRLVPGG-----SRMDTASMLDEAASYLKFL 326 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.215	277	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.01E-9	283	331	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.2E-9	283	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.8E-11	283	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-12	283	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MDDFGGWSMQ YAAEPCLQPC RSSDDGLLGE FLGGGFDLCP DHGGLDLPAS CPVQNLIQCH 60 NGGSLSDGVQ EGFMGLDAAD VLPSVAGAAE DSLLDPFVYV VPDDITVAEE PAQTPASNTA 120 FSGYSSTTGG GGNGNISSGE SNTCGGYDTD VASPCAVSRT QLLQTTTGVP PSKRKLAGKY 180 PAIAASGAKA AAGRRGEKRT TAATSSSSTS ITFAAGQGHE HAAGGSACGG YEPDSDAIAQ 240 VKEMIYRAAA MRPVHQLVCG AAEPPSQTRP RRRNVRISSD PQTVAARLRR ERVSERLRVL 300 QRLVPGGSRM DTASMLDEAA SYLKFLKSQL KALERANPSN GSLLQSYTGG LGGGGTSAGT 360 VLAFGRGSAI GGYVKSNRDI A*

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MDDFGGWSMQ YAAEPCLQPC RSSDDGLLGE FLGGGFDLCP DHGGLDLPAS CPVQNLIQCH  60
NGGSLSDGVQ EGFMGLDAAD VLPSVAGAAE DSLLDPFVYV VPDDITVAEE PAQTPASNTA  120
FSGYSSTTGG GGNGNISSGE SNTCGGYDTD VASPCAVSRT QLLQTTTGVP PSKRKLAGKY  180
PAIAASGAKA AAGRRGEKRT TAATSSSSTS ITFAAGQGHE HAAGGSACGG YEPDSDAIAQ  240
VKEMIYRAAA MRPVHQLVCG AAEPPSQTRP RRRNVRISSD PQTVAARLRR ERVSERLRVL  300
QRLVPGGSRM DTASMLDEAA SYLKFLKSQL KALERANPSN GSLLQSYTGG LGGGGTSAGT  360
VLAFGRGSAI GGYVKSNRDI A*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	286	291	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269\|PubMed:21549224}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT065889	1e-133	BT065889.1 Zea mays full-length cDNA clone ZM_BFc0179C07 mRNA, complete cds.
GenBank	BT066302	1e-133	BT066302.1 Zea mays full-length cDNA clone ZM_BFc0192A04 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025806661.1	0.0	transcription factor LATE FLOWERING-like
Swissprot	A0A0P0WQ90	9e-76	LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBL	A0A2S3HAD7	0.0	A0A2S3HAD7_9POAL; Uncharacterized protein
STRING	Pavir.Ca00715.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1546	37	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-26	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.C02126.1

Publications ? help Back to Top
Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]