PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C01962.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

HB-other

Protein Properties

Length: 1852aa MW: 205770 Da PI: 5.2815

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C01962.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.6	1e-18	51	105	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ + +++yp++++r+eL+ +lgLt+rq ++WF+ rR k++k Pahal.C01962.1 51 KRVMKTPYQLEVLERTYTEDSYPNETKRAELSVQLGLTDRQLQMWFCHRRLKDRK 105 79999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.98E-17	34	105	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.4E-17	36	105	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.374	46	106	IPR001356	Homeobox domain
SMART	SM00389	4.4E-16	48	110	IPR001356	Homeobox domain
CDD	cd00086	7.83E-14	51	106	No hit	No description
Pfam	PF00046	1.9E-16	51	105	IPR001356	Homeobox domain
SMART	SM00571	5.5E-19	611	670	IPR018501	DDT domain
PROSITE profile	PS50827	16.047	611	670	IPR018501	DDT domain
Pfam	PF02791	3.2E-15	613	667	IPR018501	DDT domain
Pfam	PF05066	1.1E-15	793	860	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.1E-9	1006	1048	IPR028942	WHIM1 domain
Pfam	PF15613	7.9E-14	1185	1256	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1852 aa Download sequence Send to blast
MESSGDGGDE GAGAPSAAGM GSPGPASAPA AVAGGSSGAG ASGSGGKPPV KRVMKTPYQL 60 EVLERTYTED SYPNETKRAE LSVQLGLTDR QLQMWFCHRR LKDRKPPAKR QQRDEEVTMP 120 VIAPPPVLPP PLPPSEIMVG TVGAYGEQML PYSRRGPGRS SAVPRISVPE IGSRYYEPPP 180 VILPHMAAVH LTQAEHRVID SVEASIGEPL REDGPVLGIE FDPLPPGAFG APIVPEQPKQ 240 PYRSYESKMF SGHDAKPLKA SAFLPTIDPL LPNTVTGKRK SLVGSSSHLG SQAVHEYQFL 300 PEQPSDIYER ASQSRYYDAP TEVSNSRIAS LSTGSRFLHG AEQAPSYSFH GQLSASSHLA 360 QHGRSPILSG SADHEGALSN INVGPTPIHG QFGIPQVAGF ENSHASSERM GYHDEDTYRV 420 DRKRKHNEEA KIAREVEAHE KRIRKELEKQ DLLNRKREEQ MRRETERHDR ERRKEEERMM 480 RERQREEERF QKEQRREHKR MEKFMQKQSI RAEKLRQKEE LRREKEAARQ KAANERATAR 540 RIAREYMELM EDERLELLEL ACRSKGLPSM LSLDSDTLQQ LDSFRGMLGQ FPPETVRLKV 600 PFSIKPWAAS EDNIGNLLMV WRFFITFADV LGLPSFTLDE FLQALHDYDS RFLGELHVAL 660 LKSIIKDIED VARTPSVALG VNQSSSANPG GGHPQIVEGA YAWGFNILNW QHHLNVLTWP 720 EILRQFGLCA GFGPQLKKRN AETVYYRDDN EGRDGADVIS TLRNGSAAVS AAALMKERGY 780 TNRRRSRHRL TPGTVKFAAF HVLSLEGSKG LTILEVAEKI QKSGLRDLTT SKTPEASISA 840 ALSRDTKLFE RTAPSTYCVK TPYRKDPADS EAVLSAAREK IRVFQNALSE CEEVEKDVDE 900 AERDEDSECD DADDDADGDD MNIDDKDAKS PLVRAQDGAP VTVVCDVKKE SKESNSVVNT 960 LAPQIPQTKS SESVSLHTFD TKASTSTDPA VGDDAKYTEI DESNQGESWV QGLAEGDYCD 1020 LSVDERLNAL VALIGVATEG NSIRAILEER LEAASALKKQ MWAEAQLDKR RTREDFTSKT 1080 QYDSCVGLKV DTDRENNAAE STLTPVHNPI KNNDGNASAA NNDLLVDKQN QLITGDIAHQ 1140 QNGVSRESSI NPESLSVQQY ASSEKTRSQL KSYIGHKAEQ LYVYRSLPLG QDRRRNRYWQ 1200 FSASSSSYDP GSGRIFFESR DGYWRVIDSA EAFEALVASL NTRGIRESHL HSMLQSIEPT 1260 FKEAVERKRC STLEQPAGRI LKNGSNEIIS PNCGNEFGSP CSTLSGVASD NLMAHSDTFK 1320 IELGRNEAEK IAILKRAYVF VKWMWRECYI HQSTYAMKYG KKRYPELIQS CDYCYQIYLT 1380 EERHCSSCHK TFKPIHNFLE HSSQCEEKQR TDPNWKMHIV DHSVPIGLRL LKLLLATIEA 1440 SVPAEALQPF WTDGYRKSWG AKLYSASSAE EVLQMLTMLE GAIKRDYLSS NFETTTELLN 1500 SNTQDTNQNS VARSGSATVL PWVPDTTAAV ALRLLDLDSS ISYTFHPKAA SNKDREAGDF 1560 MNLPPRYPAI RNKQEIEHFG AIGFDQQDGM LLANSNGRRG RGRGSRGGSR GGRSRSRGGK 1620 VPRGISSSSR IQFRDDNNIS YEKGPLKIAK NTRGRGRGRG RGRGRGRGRG LRTVRPRQPS 1680 ELGTRSIPKA NLLGSFSMLS KANRSGTVHS PESSGAEEWA LERREYVEDD DNNSVSQSDE 1740 SEENENGEPM NEEYDDEQVP GYRRDNSESS PLQMMDDGSE DNDEDAEGDE EGDDGEDYEA 1800 EDPVGDDDDD VDMGGDGEIG DEDDDDDDGG DGVANADVDE GGTSYSSEYS E*

Sequence ? help Back to Top

Protein Sequence Length: 1852 aa Download sequence Send to blast

MESSGDGGDE GAGAPSAAGM GSPGPASAPA AVAGGSSGAG ASGSGGKPPV KRVMKTPYQL  60
EVLERTYTED SYPNETKRAE LSVQLGLTDR QLQMWFCHRR LKDRKPPAKR QQRDEEVTMP  120
VIAPPPVLPP PLPPSEIMVG TVGAYGEQML PYSRRGPGRS SAVPRISVPE IGSRYYEPPP  180
VILPHMAAVH LTQAEHRVID SVEASIGEPL REDGPVLGIE FDPLPPGAFG APIVPEQPKQ  240
PYRSYESKMF SGHDAKPLKA SAFLPTIDPL LPNTVTGKRK SLVGSSSHLG SQAVHEYQFL  300
PEQPSDIYER ASQSRYYDAP TEVSNSRIAS LSTGSRFLHG AEQAPSYSFH GQLSASSHLA  360
QHGRSPILSG SADHEGALSN INVGPTPIHG QFGIPQVAGF ENSHASSERM GYHDEDTYRV  420
DRKRKHNEEA KIAREVEAHE KRIRKELEKQ DLLNRKREEQ MRRETERHDR ERRKEEERMM  480
RERQREEERF QKEQRREHKR MEKFMQKQSI RAEKLRQKEE LRREKEAARQ KAANERATAR  540
RIAREYMELM EDERLELLEL ACRSKGLPSM LSLDSDTLQQ LDSFRGMLGQ FPPETVRLKV  600
PFSIKPWAAS EDNIGNLLMV WRFFITFADV LGLPSFTLDE FLQALHDYDS RFLGELHVAL  660
LKSIIKDIED VARTPSVALG VNQSSSANPG GGHPQIVEGA YAWGFNILNW QHHLNVLTWP  720
EILRQFGLCA GFGPQLKKRN AETVYYRDDN EGRDGADVIS TLRNGSAAVS AAALMKERGY  780
TNRRRSRHRL TPGTVKFAAF HVLSLEGSKG LTILEVAEKI QKSGLRDLTT SKTPEASISA  840
ALSRDTKLFE RTAPSTYCVK TPYRKDPADS EAVLSAAREK IRVFQNALSE CEEVEKDVDE  900
AERDEDSECD DADDDADGDD MNIDDKDAKS PLVRAQDGAP VTVVCDVKKE SKESNSVVNT  960
LAPQIPQTKS SESVSLHTFD TKASTSTDPA VGDDAKYTEI DESNQGESWV QGLAEGDYCD  1020
LSVDERLNAL VALIGVATEG NSIRAILEER LEAASALKKQ MWAEAQLDKR RTREDFTSKT  1080
QYDSCVGLKV DTDRENNAAE STLTPVHNPI KNNDGNASAA NNDLLVDKQN QLITGDIAHQ  1140
QNGVSRESSI NPESLSVQQY ASSEKTRSQL KSYIGHKAEQ LYVYRSLPLG QDRRRNRYWQ  1200
FSASSSSYDP GSGRIFFESR DGYWRVIDSA EAFEALVASL NTRGIRESHL HSMLQSIEPT  1260
FKEAVERKRC STLEQPAGRI LKNGSNEIIS PNCGNEFGSP CSTLSGVASD NLMAHSDTFK  1320
IELGRNEAEK IAILKRAYVF VKWMWRECYI HQSTYAMKYG KKRYPELIQS CDYCYQIYLT  1380
EERHCSSCHK TFKPIHNFLE HSSQCEEKQR TDPNWKMHIV DHSVPIGLRL LKLLLATIEA  1440
SVPAEALQPF WTDGYRKSWG AKLYSASSAE EVLQMLTMLE GAIKRDYLSS NFETTTELLN  1500
SNTQDTNQNS VARSGSATVL PWVPDTTAAV ALRLLDLDSS ISYTFHPKAA SNKDREAGDF  1560
MNLPPRYPAI RNKQEIEHFG AIGFDQQDGM LLANSNGRRG RGRGSRGGSR GGRSRSRGGK  1620
VPRGISSSSR IQFRDDNNIS YEKGPLKIAK NTRGRGRGRG RGRGRGRGRG LRTVRPRQPS  1680
ELGTRSIPKA NLLGSFSMLS KANRSGTVHS PESSGAEEWA LERREYVEDD DNNSVSQSDE  1740
SEENENGEPM NEEYDDEQVP GYRRDNSESS PLQMMDDGSE DNDEDAEGDE EGDDGEDYEA  1800
EDPVGDDDDD VDMGGDGEIG DEDDDDDDGG DGVANADVDE GGTSYSSEYS E*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1658	1668	RGRGRGRGRGR
2	1660	1669	RGRGRGRGRG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808936.1	0.0	homeobox-DDT domain protein RLT2
TrEMBL	A0A2S3H9N7	0.0	A0A2S3H9N7_9POAL; Uncharacterized protein
STRING	Si020949m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Pahal.C01962.1