PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01946.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WOX
Protein Properties Length: 477aa    MW: 50096.8 Da    PI: 7.5942
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01946.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.31.7e-1552111256
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 
                     r+R+++ +eq+++Le  F++   +p ++e++++  +l     + +++V++WFqNr+ + k
  Pahal.C01946.2  52 RPRWNPRPEQIRILEGIFNSgMVNPPRDEIRRIRLQLqeygPVGDANVFYWFQNRKSRTK 111
                     89*****************99****************99999****************99 PP

2Wus_type_Homeobox105.92.6e-3451113264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +r+RW+P+peQi+iLe +++sG+++P+++ei+ri+ +L+eyG ++d+NVfyWFQNrk+R ++k
     Pahal.C01946.2  51 PRPRWNPRPEQIRILEGIFNSGMVNPPRDEIRRIRLQLQEYGPVGDANVFYWFQNRKSRTKHK 113
                        689**********************************************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.64E-1248117IPR009057Homeodomain-like
PROSITE profilePS500719.96148113IPR001356Homeobox domain
SMARTSM003892.4E-650117IPR001356Homeobox domain
CDDcd000864.56E-751113No hitNo description
Gene3DG3DSA:1.10.10.607.1E-651112IPR009057Homeodomain-like
PfamPF000463.5E-1352112IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MASSNRHWPS MYRSSLACNF QQPQPDMNNG GGGKSSLMSS RCEESGRNPE PRPRWNPRPE  60
QIRILEGIFN SGMVNPPRDE IRRIRLQLQE YGPVGDANVF YWFQNRKSRT KHKLRAAGQL  120
QPSSRAALAR TCAPPPPAPA PAPVTPPRHL FASPVAPTSS SSSSSDRSSG SSKSVRPTVA  180
LPSPAAAAIQ QGVLPATAMD LLSPTPTPAL AARQLYYHSQ LMAPVMPAMP ELITSTEPLF  240
LQWQQGGHYL PATELGGVLG AHTHEPAAIS HSVLLGLCNE ALGQDCVDIS SSKGLGHGQY  300
WNTTCGSDLS SNKTDAVSAV IRDDEKARLG LLHYGFGAAA AATSAPLATP VPQAAVDAST  360
AMLLPSPAPS TVAAAATTAV LTDQLQGLLD AGLIGGTPPP PPTATVVAVA RDALTCAATA  420
TAQFSVPAMR LDVRLAFGEA AVLVRHTGEP VLVDEYGVTV EPLQPDTLYY VLMATH*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9498961e-160EU949896.1 Zea mays clone 451620 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809387.10.0WUSCHEL-related homeobox 12-like
SwissprotA3B6V01e-143WOX12_ORYSJ; WUSCHEL-related homeobox 12
TrEMBLA0A2S3H9L50.0A0A2S3H9L5_9POAL; Uncharacterized protein
STRINGSi025013m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.12e-35homeobox-3
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]