PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.C01946.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 477aa MW: 50096.8 Da PI: 7.5942 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 48.3 | 1.7e-15 | 52 | 111 | 2 | 56 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 r+R+++ +eq+++Le F++ +p ++e++++ +l + +++V++WFqNr+ + k Pahal.C01946.2 52 RPRWNPRPEQIRILEGIFNSgMVNPPRDEIRRIRLQLqeygPVGDANVFYWFQNRKSRTK 111 89*****************99****************99999****************99 PP | |||||||
2 | Wus_type_Homeobox | 105.9 | 2.6e-34 | 51 | 113 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RW+P+peQi+iLe +++sG+++P+++ei+ri+ +L+eyG ++d+NVfyWFQNrk+R ++k Pahal.C01946.2 51 PRPRWNPRPEQIRILEGIFNSGMVNPPRDEIRRIRLQLQEYGPVGDANVFYWFQNRKSRTKHK 113 689**********************************************************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.64E-12 | 48 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.961 | 48 | 113 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.4E-6 | 50 | 117 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.56E-7 | 51 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-6 | 51 | 112 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.5E-13 | 52 | 112 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010075 | Biological Process | regulation of meristem growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 477 aa Download sequence Send to blast |
MASSNRHWPS MYRSSLACNF QQPQPDMNNG GGGKSSLMSS RCEESGRNPE PRPRWNPRPE 60 QIRILEGIFN SGMVNPPRDE IRRIRLQLQE YGPVGDANVF YWFQNRKSRT KHKLRAAGQL 120 QPSSRAALAR TCAPPPPAPA PAPVTPPRHL FASPVAPTSS SSSSSDRSSG SSKSVRPTVA 180 LPSPAAAAIQ QGVLPATAMD LLSPTPTPAL AARQLYYHSQ LMAPVMPAMP ELITSTEPLF 240 LQWQQGGHYL PATELGGVLG AHTHEPAAIS HSVLLGLCNE ALGQDCVDIS SSKGLGHGQY 300 WNTTCGSDLS SNKTDAVSAV IRDDEKARLG LLHYGFGAAA AATSAPLATP VPQAAVDAST 360 AMLLPSPAPS TVAAAATTAV LTDQLQGLLD AGLIGGTPPP PPTATVVAVA RDALTCAATA 420 TAQFSVPAMR LDVRLAFGEA AVLVRHTGEP VLVDEYGVTV EPLQPDTLYY VLMATH* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU949896 | 1e-160 | EU949896.1 Zea mays clone 451620 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809387.1 | 0.0 | WUSCHEL-related homeobox 12-like | ||||
Swissprot | A3B6V0 | 1e-143 | WOX12_ORYSJ; WUSCHEL-related homeobox 12 | ||||
TrEMBL | A0A2S3H9L5 | 0.0 | A0A2S3H9L5_9POAL; Uncharacterized protein | ||||
STRING | Si025013m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33880.1 | 2e-35 | homeobox-3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.C01946.2 |
Publications ? help Back to Top | |||
---|---|---|---|
|