PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01912.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 253aa    MW: 27535 Da    PI: 7.7663
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01912.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.2e-162976148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd  lv++++ +G g W+  ar  g++Rt+k+c++rw++yl
   Pahal.C01912.1 29 KGPWTMEEDHVLVNYIAAHGEGAWNNLARAAGLHRTGKSCRLRWLNYL 76
                     79********************************************97 PP
2Myb_DNA-binding543.7e-1782125146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+eE+el+v++ +++G++ W++Ia++++ gRt++++k++w++
   Pahal.C01912.1  82 RGNMTAEEQELIVQLQARWGNK-WSRIAKHLP-GRTDNEVKNFWRT 125
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.8222476IPR017930Myb domain
SuperFamilySSF466894.49E-3027123IPR009057Homeodomain-like
SMARTSM007172.8E-112878IPR001005SANT/Myb domain
PfamPF002497.4E-142976IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-213083IPR009057Homeodomain-like
CDDcd001671.01E-83176No hitNo description
PROSITE profilePS5129424.31977131IPR017930Myb domain
SMARTSM007173.1E-1581129IPR001005SANT/Myb domain
PfamPF002494.3E-1582125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2184130IPR009057Homeodomain-like
CDDcd001671.76E-1284125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MQSAMDAGAV VQVQVPVPVP PERAAAMRKG PWTMEEDHVL VNYIAAHGEG AWNNLARAAG  60
LHRTGKSCRL RWLNYLHPHV RRGNMTAEEQ ELIVQLQARW GNKWSRIAKH LPGRTDNEVK  120
NFWRTKIQPK RHRSSDCSSS AMEAIAMAGI CRGMGMAGHR SSTPAITEGQ GSSSHSDRTG  180
VTQDYGIVTQ QPSISSSVAD HLGYGVHGPG GGGAGAMDMD MDFLPEFLAA SGENFWAIDD  240
FWTTMQSFHG NI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-242713025127MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808591.10.0transcription factor MYB24-like
TrEMBLA0A2S3H9I50.0A0A2S3H9I5_9POAL; Uncharacterized protein
STRINGPavir.J02092.1.p1e-119(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.12e-67myb domain protein 21