PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01870.4
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YB
Protein Properties Length: 141aa    MW: 15386.2 Da    PI: 4.908
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01870.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB173.72e-5418114298
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     +eqdr+lPian++rim++++P+n+ki+kdake+vqecvsefisf+tseasdkc +ekrktingddl+w+++tlGfe+yveplk ylk yre+eg+
  Pahal.C01870.4  18 KEQDRYLPIANIGRIMRRAVPENGKIAKDAKESVQECVSEFISFITSEASDKCMKEKRKTINGDDLIWSMGTLGFEEYVEPLKHYLKLYRETEGD 112
                     89********************************************************************************************9 PP

           NF-YB  97 kk 98 
                     +k
  Pahal.C01870.4 113 TK 114
                     75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.9E-5016123IPR009072Histone-fold
SuperFamilySSF471134.19E-3820120IPR009072Histone-fold
PfamPF008081.7E-262387IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.3E-195169No hitNo description
PROSITE patternPS0068505470IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.3E-197088No hitNo description
PRINTSPR006152.3E-1989107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MSEAEGAPET GGGSYGGKEQ DRYLPIANIG RIMRRAVPEN GKIAKDAKES VQECVSEFIS  60
FITSEASDKC MKEKRKTING DDLIWSMGTL GFEEYVEPLK HYLKLYRETE GDTKGSKSSD  120
HTGKKEILLN GEPGSSFDGV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A3e-4618108393NF-YB
4awl_B3e-4618108494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A3e-4618108494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269|PubMed:14617083}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1016331e-129FP101633.1 Phyllostachys edulis cDNA clone: bphyst004h13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805143.12e-99nuclear transcription factor Y subunit B-4-like
RefseqXP_025805144.12e-99nuclear transcription factor Y subunit B-4-like
SwissprotQ65XK12e-75NFYB4_ORYSJ; Nuclear transcription factor Y subunit B-4
TrEMBLA0A2T7EA318e-98A0A2T7EA31_9POAL; Uncharacterized protein
TrEMBLA0A2T8KII48e-98A0A2T8KII4_9POAL; Uncharacterized protein
TrEMBLA0A2T8KIK12e-97A0A2T8KIK1_9POAL; Uncharacterized protein
STRINGPavir.J31885.1.p2e-94(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.37e-60nuclear factor Y, subunit B1
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]