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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pahal.C01825.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
GATA |
| Protein Properties |
Length: 376aa MW: 38590.2 Da PI: 8.8721 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.C01825.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 63.3 | 2.9e-20 | 251 | 285 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C+nCgt++TplWR+gp+g+k+LCnaCG++++k+++
Pahal.C01825.1 251 CANCGTSSTPLWRNGPRGPKSLCNACGIRFKKEER 285
********************************986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 376 aa
Download sequence Send
to blast |
MGGRRARPYE AWWLRDTPVP AWLGLLPLPR CPGPAPGLSL DLRVNSEGGG RVLRDKCEAG 60
IAAASGSAST SQSVASSLTG HCARHRIHSA STRTVASLRT MLRHCSGSSH QSVAAASGTM 120
ASTTFSLFFP LPNKGQWPAA AADEAAAFDD DHSSITTSPS SPSSTSSAGS VDCTLSLGTP 180
SSRRAAARPA ELAKRAVQPA YPSVSASPVS WDVAADQSYY CCQGSKPGAA GAAKGAAARA 240
EHDPLFVDRR CANCGTSSTP LWRNGPRGPK SLCNACGIRF KKEERRAAAT AAMDHHGACG 300
YAAQRAAQYG PAGKQAPGAV PCYGEGAFPC GGGDVADAAA EAPFLAWRLN VVAPAPAPAP 360
AFAVWPERAG LFQYN*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000250|UniProtKB:Q6L5E5}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FP095696 | 4e-49 | FP095696.1 Phyllostachys edulis cDNA clone: bphyst013i06, full insert sequence. |
