PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C01813.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 97aa MW: 10975.5 Da PI: 9.4241 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.9 | 2.6e-09 | 14 | 57 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT+ +l+ +a + + ++ +W+ Iar +g g+++++++ ++ Pahal.C01813.1 14 QWTKKQNKLFEQALAVYDKDtpdRWHNIARAVG-GKSAEEVRRYY 57 7********************************.*********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 11.154 | 10 | 65 | IPR017884 | SANT domain |
SMART | SM00717 | 7.3E-8 | 11 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-7 | 13 | 57 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.52E-13 | 14 | 68 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-7 | 14 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.65E-7 | 15 | 60 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
MASMSMTSSS VRAQWTKKQN KLFEQALAVY DKDTPDRWHN IARAVGGKSA EEVRRYYELL 60 EEDVKHIESG KVPFPAYRCP GGALGYEADR MKHLKI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-35 | 4 | 96 | 1 | 92 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241528 | 2e-84 | AK241528.1 Oryza sativa Japonica Group cDNA, clone: J065171E20, full insert sequence. | |||
GenBank | CT836354 | 2e-84 | CT836354.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA043L05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808536.1 | 1e-67 | protein RADIALIS-like 3 | ||||
Swissprot | Q58FS3 | 6e-35 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A2S3H993 | 3e-66 | A0A2S3H993_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7E9X0 | 3e-66 | A0A2T7E9X0_9POAL; Uncharacterized protein | ||||
STRING | Si023770m | 3e-61 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 2e-27 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C01813.1 |
Publications ? help Back to Top | |||
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