PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01813.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 97aa    MW: 10975.5 Da    PI: 9.4241
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01813.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.6e-091457344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT+   +l+ +a + + ++   +W+ Iar +g g+++++++ ++
   Pahal.C01813.1 14 QWTKKQNKLFEQALAVYDKDtpdRWHNIARAVG-GKSAEEVRRYY 57
                     7********************************.*********99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.1541065IPR017884SANT domain
SMARTSM007177.3E-81163IPR001005SANT/Myb domain
PfamPF002493.5E-71357IPR001005SANT/Myb domain
SuperFamilySSF466894.52E-131468IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-71467IPR009057Homeodomain-like
CDDcd001673.65E-71560No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MASMSMTSSS VRAQWTKKQN KLFEQALAVY DKDTPDRWHN IARAVGGKSA EEVRRYYELL  60
EEDVKHIESG KVPFPAYRCP GGALGYEADR MKHLKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-35496192RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2415282e-84AK241528.1 Oryza sativa Japonica Group cDNA, clone: J065171E20, full insert sequence.
GenBankCT8363542e-84CT836354.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA043L05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808536.11e-67protein RADIALIS-like 3
SwissprotQ58FS36e-35RAD_ANTMA; Transcription factor RADIALIS
TrEMBLA0A2S3H9933e-66A0A2S3H993_9POAL; Uncharacterized protein
TrEMBLA0A2T7E9X03e-66A0A2T7E9X0_9POAL; Uncharacterized protein
STRINGSi023770m3e-61(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-27RAD-like 1
Publications ? help Back to Top
  1. Corley SB,Carpenter R,Copsey L,Coen E
    Floral asymmetry involves an interplay between TCP and MYB transcription factors in Antirrhinum.
    Proc. Natl. Acad. Sci. U.S.A., 2005. 102(14): p. 5068-73
    [PMID:15790677]
  2. Costa MM,Fox S,Hanna AI,Baxter C,Coen E
    Evolution of regulatory interactions controlling floral asymmetry.
    Development, 2005. 132(22): p. 5093-101
    [PMID:16236768]
  3. Stevenson CE, et al.
    Crystallization and preliminary X-ray analysis of the RAD protein from Antirrhinum majus.
    Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 2005. 61(Pt 10): p. 885-8
    [PMID:16511186]
  4. Stevenson CE, et al.
    Crystal structure of the MYB domain of the RAD transcription factor from Antirrhinum majus.
    Proteins, 2006. 65(4): p. 1041-5
    [PMID:17044043]