PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01682.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 341aa    MW: 35643.7 Da    PI: 6.0792
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01682.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.51.2e-294108199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleq 89 
                     +C++C+vlr++C++ C+++p++     p++q++++ +++k++G++ +l+l++a+p++  r+++++sl+yeA+ r+ +PvyG+vg++++++++l+q
  Pahal.C01682.1   4 SCNGCRVLRKGCTDACTIRPCLqwikaPDAQANATVFLAKFYGRAGLLNLIDAAPDDAlRPAVFRSLLYEACGRIVNPVYGSVGLLWSGKWHLCQ 98 
                     6*************************999*************************99988************************************ PP

          DUF260  90 lkaelallke 99 
                     +++e++l+++
  Pahal.C01682.1  99 AAVEAVLRGA 108
                     ****998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.6153110IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-234103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MRLSCNGCRV LRKGCTDACT IRPCLQWIKA PDAQANATVF LAKFYGRAGL LNLIDAAPDD  60
ALRPAVFRSL LYEACGRIVN PVYGSVGLLW SGKWHLCQAA VEAVLRGAPI VQISDEDAAA  120
ASPAHLHKAA AASCYDIRHV AAKAKPAAAA SVAADDAAAA PAASSAPADD TQSSKGGSVL  180
RKVAKPGRTR FKRASSSSSP PSKRQAAKRS KPSGTDDDDD DLVMADRRHH DEEQHVQQMM  240
ADHASSDDDT HHHQEASAAS LDTDAEAASH VSQAEQTPAA EEDQLQEEQQ QPGLDLTLGF  300
GLFAPVAAAA RPPTPPADAG CSRGAWSAAE EPAAVGFQFL *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0954394e-95FP095439.1 Phyllostachys edulis cDNA clone: bphylf039l14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805937.10.0nucleolin 1-like
TrEMBLA0A2S3H8X50.0A0A2S3H8X5_9POAL; Uncharacterized protein
STRINGPavir.J00526.1.p1e-179(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.16e-65LOB domain-containing protein 40