PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01624.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 380aa    MW: 41496 Da    PI: 5.9206
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01624.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.3e-13194238554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h   Er+RR+++N++f  L+++lP+a     +K +Ka+iL +A +Y++ L
  Pahal.C01624.1 194 HVLSERKRREKLNDSFKALKTVLPPA-----PKKDKASILIRARDYVNTL 238
                     7789*********************9.....7**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.64189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-16191254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.13E-13191243No hitNo description
Gene3DG3DSA:4.10.280.103.2E-15193254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10194238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-13195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MDGCGIWSPF QSGGIGEGAA SERSRGSELQ QEQDLPISSL VEEQLQLEQI YLLMDMEEHG  60
HAEAPSSLSS TFPAASFSAS PDEASSLVPG SSNLDTIPNL EELITCQEAR QEQARRRNGH  120
ARGAFMPYSR HLSTKKKPKP GAGAGGQRAI KAAMSALARM HKVRLAQWQR YQMEMALAAV  180
APPTGSICGN QLQHVLSERK RREKLNDSFK ALKTVLPPAP KKDKASILIR ARDYVNTLKS  240
RLSELEERNR TLVELQHQCD DGGERDDVSD EQIEVDINRA AAGAAEETSQ EFHLKIVVRS  300
GCNAMDAVVG ILECLKELGD VRLADMDTGS RGTTLALQMK TSRCDDIFLK ESVIKSVKGV  360
MQSKIDSLSF FDPSVEMGI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197202ERKRRE
2198203RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809512.10.0putative transcription factor bHLH041 isoform X1
TrEMBLA0A2S3H9480.0A0A2S3H948_9POAL; Uncharacterized protein
STRINGPavir.Ca00825.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.17e-23bHLH family protein