PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01473.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 266aa    MW: 28648.7 Da    PI: 9.9549
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01473.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.7e-1170115454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h+e+ErrRR+riN  ++ Lr+++P a     + ++Ka+ L ++v  +k+L
  Pahal.C01473.1  70 VHSEAERRRRERINAHLAALRRMIPDA-----RQMDKATLLARVVCQLKDL 115
                     69************************9.....7899999999999887777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.32266115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-1269124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-870115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-1270126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-1072121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.573157236IPR002912ACT domain
SuperFamilySSF550219.16E-5159206No hitNo description
Gene3DG3DSA:3.30.70.2605.3E-5160206No hitNo description
CDDcd048732.00E-10160225No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MAAASACQPF QEGEQHLPLR HGGSVLPPVN RGTALPLRQA SSVPPPDARE LLPPPSSSGR  60
SATEARALKV HSEAERRRRE RINAHLAALR RMIPDARQMD KATLLARVVC QLKDLKRKAA  120
ETRQPQPIPA EANGITVDCY TAGAAAGGYG RPATYIRACV SCDDRPGLLA DLAGAFRGLR  180
LRPTRADMAS LGGRARCEFM LCREEGDVGS AGRVKALEAG VRQALTCVAF PETAYGCNYR  240
SRRQRVLESH YALGHELGVG DHRGW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17479ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809242.10.0transcription factor bHLH51-like
TrEMBLA0A2T8KI480.0A0A2T8KI48_9POAL; Uncharacterized protein
STRINGPavir.Ca01107.1.p1e-144(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.14e-27bHLH family protein