PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01395.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family RAV
Protein Properties Length: 296aa    MW: 31995.2 Da    PI: 10.2209
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01395.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.84.6e-123987155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    s+ykGV   + +grW A+I++      r +r++lg+f  +  Aa+a++ a+++++g
  Pahal.C01395.1 39 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFADEAAAARAYDVAALRFRG 87
                    78****9888.8*********......44**********99*************98 PP
2B379.73.1e-25150239183
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     f+k+ tpsdv++++rlvlpk +ae+h      g + + ++ l +ed   g++W+++++++ +s++yvlt+GW++Fv+++g+ +gD+v F+
  Pahal.C01395.1 150 FEKAVTPSDVGRLNRLVLPKLHAEKHfppldeGADAAPPVLLAFEDvGGGKVWRFRYSFWSSSQSYVLTRGWSRFVREKGITAGDTVAFS 239
                     89*****************************988888999******6666***************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-163996IPR016177DNA-binding domain
PfamPF008471.7E-73987IPR001471AP2/ERF domain
PROSITE profilePS5103220.7324095IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-194096IPR001471AP2/ERF domain
SMARTSM003801.9E-2240101IPR001471AP2/ERF domain
PRINTSPR003676.7E-74152IPR001471AP2/ERF domain
CDDcd000182.05E-114195No hitNo description
PRINTSPR003676.7E-77797IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.9E-33145268IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-26146241IPR015300DNA-binding pseudobarrel domain
CDDcd100179.18E-23149238No hitNo description
SMARTSM010197.0E-19150249IPR003340B3 DNA binding domain
PfamPF023625.4E-22150239IPR003340B3 DNA binding domain
PROSITE profilePS5086312.492150265IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MSSLAVMSTS TQEVEQDWMA GDEAAAASPR ARSSSSSSSR YKGVVPQPNG RWGAQIYERH  60
ARVWLGTFAD EAAAARAYDV AALRFRGRSG AVNFPRPADA AEMAFLAARP KGEVVDMLRK  120
HTYDDELRQA LRSGGAGDRA LALVPRVSLF EKAVTPSDVG RLNRLVLPKL HAEKHFPPLD  180
EGADAAPPVL LAFEDVGGGK VWRFRYSFWS SSQSYVLTRG WSRFVREKGI TAGDTVAFSQ  240
AAVSSTSGTD GEMDAKRRMF IECRKRKRKD DGGARVVRLF GANIAGSAIG ASCMC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-3914924113103DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255267KRRMFIECRKRKR
2263268RKRKRK
3263269RKRKRKD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806570.10.0AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ9AWS72e-92Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A2S3H8780.0A0A2S3H878_9POAL; Uncharacterized protein
STRINGPavir.J00384.1.p1e-121(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-76related to ABI3/VP1 2