PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01323.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 314aa    MW: 35575.8 Da    PI: 6.1002
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01323.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding377.7e-12144187447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      WT+ E+ +++++   +G g+Wk I+r++ ++Rt+ q+ s+ qky
   Pahal.C01323.1 144 WTKHEHRQFLRGLCVYGRGDWKNISRHFVTTRTPVQVSSHAQKY 187
                      *******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-10135190IPR009057Homeodomain-like
PROSITE profilePS5129415.301136192IPR017930Myb domain
SuperFamilySSF466892.24E-16138193IPR009057Homeodomain-like
SMARTSM007177.1E-10140190IPR001005SANT/Myb domain
TIGRFAMsTIGR015575.9E-13141190IPR006447Myb domain, plants
PfamPF002493.7E-8144187IPR001005SANT/Myb domain
CDDcd001673.57E-8144188No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDPKFNGEWS ASEIGMVKSL IASHNTSNNY TNDINKKHND IVNQLQAWFP LKEKCQVIKL  60
YVELVVEMMQ SGQSGYQSMV AINSLVNDNY GIPVEDPTMD NMNIKMPLAS LIGKKPEATR  120
MVEEAPQRQV IIPQQERRQK GRFWTKHEHR QFLRGLCVYG RGDWKNISRH FVTTRTPVQV  180
SSHAQKYFRR LERTNEKQRY SINDIGLYDD EPQALNNSSS WEPLTFAGAN NPNVYGSSSE  240
LPTMNNLAHV WSSPFLYSDG QASSSQATTW TGQQMGASSS TTLEPEGAGS QMAWIGDQQG  300
DFIHEQWMDI DDM*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806560.10.0transcription factor SRM1-like
TrEMBLA0A2S3H8110.0A0A2S3H811_9POAL; Uncharacterized protein
STRINGPavir.J00203.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-24MYB family protein