PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C01321.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 240aa MW: 27146.5 Da PI: 6.9683 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.1 | 2.2e-09 | 109 | 149 | 7 | 47 |
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +E +++++ +++G g+Wk I+r++ +++t+ q+ ++ qky Pahal.C01321.1 109 QERRQFLRGLHMYGRGDWKNISRHFVTTKTPVQVSDHAQKY 149 7999************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.7E-7 | 102 | 152 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 2.1E-8 | 109 | 152 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.0E-7 | 109 | 149 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-6 | 109 | 149 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.58E-11 | 109 | 155 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.69E-7 | 110 | 150 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MDPKFNGEWS TFEISTVKSL IASHNAWFPM KEKHQEIKLY VELVVEMTML RNQSMVAINN 60 LVNDNYGIPM EDPTMDNVDM SLASLTYKKP EAIRVVEEAP QQQVIIPQQE RRQFLRGLHM 120 YGRGDWKNIS RHFVTTKTPV QVSDHAQKYF HRIERTTEKQ CYSINDIGLN DAKSWVHNNS 180 TSREALAFAG GTYNPNGHGP SSELATMNNF AQAWSPFLYS AGQASSSQPT SWIGQQMGG* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806559.1 | 1e-132 | myb-like protein I | ||||
TrEMBL | A0A2T7E832 | 1e-149 | A0A2T7E832_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca01211.1.p | 1e-107 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-19 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C01321.1 |